RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSCPRG00005006566	Gene ID	109308860	Accession	-
Symbol		Alias	-	Full Name	enhancer of mRNA decapping 3
Status	Confidence	Length	34505 bases	Strand	Plus strand
Position	MDVP01000032.1 : 4307930 - 4342434	RNA binding domain	LSM14 , FDF
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCPRP00005009247	LSM14	PF12701	3.2e-10	1
ENSCPRP00005009247	FDF	PF09532	7.1e-17	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCPRT00005010877	1688	508aa	ENSCPRP00005009247

Gene Model

Click here to download ENSCPRG00005006566's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCPRG00005006566's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCPRG00005006566	crocodylus_porosus	ENSCPRP00005006282	32.9949	17.0897	crocodylus_porosus	ENSCPRP00005009247	38.3858	19.8819
ENSCPRG00005006566	crocodylus_porosus	ENSCPRP00005007792	30.3318	15.0079	crocodylus_porosus	ENSCPRP00005009247	37.7953	18.7008

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCPRG00005006566	crocodylus_porosus	ENSCPRP00005009247	7.28346	3.74016	physeter_catodon	ENSPCTP00005018872	24.6667	12.6667
ENSCPRG00005006566	crocodylus_porosus	ENSCPRP00005009247	26.5748	12.7953	cervus_hanglu_yarkandensis	ENSCHYP00000013738	27.7207	13.347
ENSCPRG00005006566	crocodylus_porosus	ENSCPRP00005009247	26.5748	12.7953	cervus_hanglu_yarkandensis	ENSCHYP00000013933	27.7207	13.347
ENSCPRG00005006566	crocodylus_porosus	ENSCPRP00005009247	26.5748	11.4173	oncorhynchus_tshawytscha	ENSOTSP00005043800	31.3953	13.4884
ENSCPRG00005006566	crocodylus_porosus	ENSCPRP00005009247	19.0945	7.67717	oncorhynchus_tshawytscha	ENSOTSP00005043840	27.1709	10.9244
ENSCPRG00005006566	crocodylus_porosus	ENSCPRP00005009247	33.0709	16.9291	saccharomyces_cerevisiae	YJR103W	29.0657	14.8789
ENSCPRG00005006566	crocodylus_porosus	ENSCPRP00005009247	32.874	15.748	saccharomyces_cerevisiae	YBL039C	28.8428	13.8169

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression