RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCPOG00000021527	Gene ID		Accession	-
Symbol	PAPOLB	Alias	-	Full Name	poly(A) polymerase beta
Status	Confidence	Length	2110 bases	Strand	Plus strand
Position	DS562885.1 : 8574174 - 8576283	RNA binding domain	PAP_RNA-bind
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCPOP00000021033	PAP_RNA-bind	PF04926	2e-26	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
PAPOLB-201	ENSCPOT00000024771	1611	536aa	ENSCPOP00000021033

Gene Model

Click here to download ENSCPOG00000021527's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCPOG00000021527's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000009255	50.8108	41.4865	cavia_porcellus	ENSCPOP00000021033	70.1493	57.2761
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000002406	64.2757	59.6343	cavia_porcellus	ENSCPOP00000021033	85.2612	79.1045

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	84.1418	76.8657	dasypus_novemcinctus	ENSDNOP00000025480	64.8921	59.2806
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	31.1567	27.0522	callithrix_jacchus	ENSCJAP00000073525	54.5752	47.3856
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	76.6791	70.5224	macaca_fascicularis	ENSMFAP00000015743	67.4877	62.069
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	84.5149	77.6119	pan_troglodytes	ENSPTRP00000093018	65.9389	60.5531
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	83.3955	77.4254	homo_sapiens	ENSP00000384700	70.1727	65.1491
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	87.3134	80.7836	canis_lupus_familiaris	ENSCAFP00845020126	69.2308	64.0533
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	31.903	28.1716	vulpes_vulpes	ENSVVUP00000008155	50.4425	44.5428
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	32.0896	28.5448	ursus_americanus	ENSUAMP00000011245	54.6032	48.5714
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	30.9701	27.2388	ailuropoda_melanoleuca	ENSAMEP00000037959	52.5316	46.2025
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	87.3134	80.0373	felis_catus	ENSFCAP00000055683	66.5718	61.0242
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	3.91791	2.42537	panthera_pardus	ENSPPRP00000013600	20	12.381
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	3.35821	2.23881	panthera_pardus	ENSPPRP00000014404	16.3636	10.9091
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	30.2239	27.2388	balaenoptera_musculus	ENSBMSP00010024974	54.5455	49.1582
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	70.709	65.1119	balaenoptera_musculus	ENSBMSP00010012034	74.9012	68.9723
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	87.5	79.6642	equus_caballus	ENSECAP00000082159	73.053	66.5109
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	86.9403	80.597	bos_taurus	ENSBTAP00000062890	68.1287	63.1579
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	85.0746	78.5448	ovis_aries_rambouillet	ENSOARP00020013053	67.0588	61.9118
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	29.6642	26.6791	oryctolagus_cuniculus	ENSOCUP00000017147	55.2083	49.6528
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	89.5522	83.7687	marmota_marmota_marmota	ENSMMMP00000008128	75.4717	70.5975
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	28.5448	25.5597	urocitellus_parryii	ENSUPAP00010014498	54.0636	48.4099
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	88.4328	81.903	dipodomys_ordii	ENSDORP00000021215	74.7634	69.2429
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	90.2985	84.3284	mus_caroli	MGP_CAROLIEiJ_P0071916	75.3894	70.405
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	90.2985	83.5821	mus_pahari	MGP_PahariEiJ_P0060130	75.3894	69.7819
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	90.1119	84.3284	mus_musculus	ENSMUSP00000100595	75.2336	70.405
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	90.1119	84.3284	mus_spretus	MGP_SPRETEiJ_P0074737	75.2336	70.405
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	91.791	88.4328	chinchilla_lanigera	ENSCLAP00000006647	78.4689	75.5981
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	88.9925	82.2761	otolemur_garnettii	ENSOGAP00000016810	67.6596	62.5532
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	79.291	73.694	aotus_nancymaae	ENSANAP00000030660	69.5581	64.6481
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	89.3657	83.7687	jaculus_jaculus	ENSJJAP00000007911	69.0202	64.6974
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	83.3955	77.9851	cervus_hanglu_yarkandensis	ENSCHYP00000035408	70.5047	65.9306
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	27.9851	25.5597	microcebus_murinus	ENSMICP00000045835	53.3808	48.7544
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	28.5448	25.9328	monodon_monoceros	ENSMMNP00015000841	52.3973	47.6027
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	0.932836	0.559702	canis_lupus_dingo	ENSCAFP00020021917	6.66667	4
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	92.5373	89.5522	octodon_degus	ENSODEP00000013308	75.0378	72.6172
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	85.0746	78.9179	moschus_moschiferus	ENSMMSP00000025011	71.811	66.6142
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	9.51493	6.90299	bos_grunniens	ENSBGRP00000032960	30.7229	22.2892
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	84.7015	78.3582	myotis_lucifugus	ENSMLUP00000019113	71.3836	66.0377
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	30.7836	27.2388	sciurus_vulgaris	ENSSVLP00005022820	52.381	46.3492
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	29.291	26.306	bison_bison_bison	ENSBBBP00000000645	53.7671	48.2877
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	32.0896	28.5448	neovison_vison	ENSNVIP00000006776	55.8442	49.6753
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	77.7985	71.0821	prolemur_simus	ENSPSMP00000001370	69.7324	63.7124
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	85.0746	78.7313	catagonus_wagneri	ENSCWAP00000025735	64.4068	59.6045
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	88.2463	81.3433	ursus_maritimus	ENSUMAP00000010143	74.6057	68.7697
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	31.1567	27.9851	rhinolophus_ferrumequinum	ENSRFEP00010018889	55.8528	50.1672
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	29.291	26.306	bos_mutus	ENSBMUP00000027703	53.7671	48.2877
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	29.6642	25.7463	phocoena_sinus	ENSPSNP00000020698	53	46
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	46.2687	33.209	caenorhabditis_elegans	T15H9.6.1	44.7653	32.13
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	45.709	34.8881	caenorhabditis_elegans	F43G6.5.1	44.2238	33.7545
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	50.7463	34.5149	caenorhabditis_elegans	Y32F6A.3.1	41.5267	28.2443
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	59.7015	46.0821	drosophila_melanogaster	FBpp0303281	38.6941	29.867
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	36.9403	27.4254	cyclopterus_lumpus	ENSCLMP00005037493	47.9419	35.5932
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	38.2463	28.3582	haplochromis_burtoni	ENSHBUP00000013937	50.995	37.8109
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	38.2463	28.3582	astatotilapia_calliptera	ENSACLP00000037268	47.0183	34.8624
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	36.0075	27.6119	labrus_bergylta	ENSLBEP00000008651	48.25	37
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	38.2463	28.3582	maylandia_zebra	ENSMZEP00005013592	47.0183	34.8624
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	22.2015	17.5373	amphiprion_ocellaris	ENSAOCP00000016740	42.8058	33.813
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	38.0597	28.9179	amphiprion_ocellaris	ENSAOCP00000013307	44.9339	34.141
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	37.5	28.5448	amphiprion_percula	ENSAPEP00000023219	44.8661	34.1518
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	21.6418	17.3507	acanthochromis_polyacanthus	ENSAPOP00000034030	45.1362	36.1868
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	37.6866	27.7985	neolamprologus_brichardi	ENSNBRP00000025146	47.3068	34.8946
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	44.403	29.6642	saccharomyces_cerevisiae	YKR002W	41.9014	27.993
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	38.2463	27.9851	pundamilia_nyererei	ENSPNYP00000029857	49.6368	36.3196
ENSCPOG00000021527	cavia_porcellus	ENSCPOP00000021033	18.097	13.9925	larimichthys_crocea	ENSLCRP00005021001	60.2484	46.5839

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression