RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSCPBG00000023634	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	29594 bases	Strand	Plus strand
Position	KK088199.1 : 6386197 - 6415790	RNA binding domain	Suf
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCPBP00000033843	Suf	PF05843	5.5e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCPBT00000039715	2894	747aa	ENSCPBP00000033843

Gene Model

Click here to download ENSCPBG00000023634's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCPBG00000023634's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000021025	60.6727	46.1837	chrysemys_picta_bellii	ENSCPBP00000033843	62.7845	47.7912

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	20.7497	11.3788	drosophila_melanogaster	FBpp0288891	26.5411	14.5548
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	48.7282	36.9478	eptatretus_burgeri	ENSEBUP00000012859	66.4234	50.365
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	56.7604	46.8541	latimeria_chalumnae	ENSLACP00000023462	82.8125	68.3594
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	75.9036	65.328	pseudonaja_textilis	ENSPTXP00000023769	79.1899	68.1564
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	40.2945	34.8059	laticauda_laticaudata	ENSLLTP00000024872	86.7435	74.928
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	78.0455	70.415	sphenodon_punctatus	ENSSPUP00000000623	66.1748	59.7049
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	76.4391	65.4618	notechis_scutatus	ENSNSUP00000023326	80.0842	68.5835
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	72.2892	62.5167	naja_naja	ENSNNAP00000007464	81.8182	70.7576
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	91.9679	88.8889	pelodiscus_sinensis	ENSPSIP00000007074	94.6281	91.4601
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	73.8956	66.1312	strigops_habroptila	ENSSHBP00005023081	84.6626	75.7669
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	93.9759	93.0388	gopherus_evgoodei	ENSGEVP00005011755	97.3648	96.3939
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	97.4565	96.6533	chelonoidis_abingdonii	ENSCABP00000003933	97.7181	96.9128
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	77.6439	67.2021	salvator_merianae	ENSSMRP00000013658	80.5556	69.7222
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	65.328	57.4297	aquila_chrysaetos_chrysaetos	ENSACCP00020018444	79.2208	69.6429
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	95.0469	94.6452	terrapene_carolina_triunguis	ENSTMTP00000003432	98.4743	98.0583
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	17.8046	9.23695	saccharomyces_cerevisiae	YGR141W	28.4797	14.7752
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	17.8046	8.03213	saccharomyces_cerevisiae	YPR157W	28.4797	12.848
ENSCPBG00000023634	chrysemys_picta_bellii	ENSCPBP00000033843	79.9197	69.344	podarcis_muralis	ENSPMRP00000023864	80.6757	70

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression