RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCJPG00005016919	Gene ID	107312864	Accession	-
Symbol		Alias	-	Full Name	uncharacterized LOC107312864
Status	Confidence	Length	7954 bases	Strand	Minus strand
Position	4 : 10851251 - 10859204	RNA binding domain	Sua5_yciO_yrdC
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCJPP00005021125	Sua5_yciO_yrdC	PF01300	7.3e-33	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCJPT00005029057	3301	895aa	ENSCJPP00005021125

Gene Model

Click here to download ENSCJPG00005016919's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCJPG00005016919's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021124	42.2374	25.4566	coturnix_japonica	ENSCJPP00005021125	41.3408	24.9162
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005020296	39.4928	20.2899	coturnix_japonica	ENSCJPP00005021125	12.1788	6.25698

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	96.5363	94.7486	gallus_gallus	ENSGALP00010016846	98.8558	97.0252
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	90.9497	85.3631	struthio_camelus_australis	ENSSCUP00000000605	93.135	87.4142
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	88.8268	82.4581	parus_major	ENSPMJP00000016237	91.1697	84.633
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	74.0782	68.6034	taeniopygia_guttata	ENSTGUP00000028920	92.4686	85.6346
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	92.9609	90.0559	anser_brachyrhynchus	ENSABRP00000022603	95.1945	92.2197
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	39.5531	36.5363	ficedula_albicollis	ENSFALP00000011826	95.4178	88.1402
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	76.3129	63.6871	callorhinchus_milii	ENSCMIP00000009483	77.7019	64.8464
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.4972	56.7598	latimeria_chalumnae	ENSLACP00000006543	74.491	60.8383
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	54.1899	43.1285	lepisosteus_oculatus	ENSLOCP00000018537	70.6997	56.2682
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	72.067	57.3184	clupea_harengus	ENSCHAP00000052209	72.3094	57.5112
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.5028	56.9832	danio_rerio	ENSDARP00000129937	71.7045	57.9545
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.2793	56.7598	carassius_auratus	ENSCARP00000043742	71.5586	57.7929
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.3911	56.648	carassius_auratus	ENSCARP00000019107	71.8358	57.8107
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.7207	55.1955	astyanax_mexicanus	ENSAMXP00000033723	71.6418	56.7164
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	68.6034	55.5307	ictalurus_punctatus	ENSIPUP00000022462	71.1472	57.5898
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	60.7821	48.1564	esox_lucius	ENSELUP00000073657	70.7412	56.0468
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.9497	55.6425	oncorhynchus_kisutch	ENSOKIP00005021221	69.7802	54.7253
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	68.7151	53.2961	oncorhynchus_kisutch	ENSOKIP00005021354	62.184	48.2305
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	68.8268	53.5196	oncorhynchus_mykiss	ENSOMYP00000072796	68.981	53.6394
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.7263	55.419	oncorhynchus_mykiss	ENSOMYP00000072789	69.5604	54.5055
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.2737	55.0838	salmo_salar	ENSSSAP00000034385	68.3572	54.355
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	61.3408	47.7095	salmo_salar	ENSSSAP00000147483	68.9698	53.6432
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.4972	55.1955	salmo_trutta	ENSSTUP00000101152	68.5777	54.4653
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	42.4581	34.8603	salmo_trutta	ENSSTUP00000088740	73.501	60.3482
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.3855	54.9721	gadus_morhua	ENSGMOP00000046650	68.7708	54.4851
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.2737	55.5307	fundulus_heteroclitus	ENSFHEP00000026910	70.4545	56.4773
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.3855	56.648	xiphophorus_maculatus	ENSXMAP00000040007	71.134	58.0756
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.162	55.5307	oryzias_latipes	ENSORLP00000007750	71.1494	57.1264
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	71.2849	56.5363	cyclopterus_lumpus	ENSCLMP00005040206	71.4446	56.6629
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.0559	55.6425	oreochromis_niloticus	ENSONIP00000064622	70.6877	56.1443
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.6089	55.419	haplochromis_burtoni	ENSHBUP00000021825	71.0376	56.5564
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.6089	55.3073	astatotilapia_calliptera	ENSACLP00000008661	71.0376	56.4424
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.9497	56.2011	sparus_aurata	ENSSAUP00010035521	71.1086	56.327
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	73.5196	60.7821	xenopus_tropicalis	ENSXETP00000088176	75.9815	62.8176
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	77.3184	66.0335	ornithorhynchus_anatinus	ENSOANP00000048633	79.0857	67.5429
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	18.1006	14.4134	dicentrarchus_labrax	ENSDLAP00005019202	70.7424	56.3319
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	57.095	44.581	erpetoichthys_calabaricus	ENSECRP00000018252	67.5926	52.7778
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.4972	55.5307	cyprinodon_variegatus	ENSCVAP00000017930	70.9236	56.6705
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.6145	56.5363	oryzias_melastigma	ENSOMEP00000026043	72.5603	58.0941
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.8324	55.1955	neolamprologus_brichardi	ENSNBRP00000017313	71.2657	56.3284
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.3855	55.0838	kryptolebias_marmoratus	ENSKMAP00000009077	70.7289	56.1503
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	18.8827	15.7542	seriola_dumerili	ENSSDUP00000009252	59.7173	49.8233
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	19.3296	15.9777	seriola_dumerili	ENSSDUP00000009037	73.3051	60.5932
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.2737	56.648	pygocentrus_nattereri	ENSPNAP00000031933	70.8571	57.9429
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.838	57.5419	poecilia_formosa	ENSPFOP00000012299	71.3964	57.9955
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.8324	56.7598	poecilia_latipinna	ENSPLAP00000012903	71.2657	57.9247
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.1676	56.3129	labrus_bergylta	ENSLBEP00000035039	71.9359	57.732
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	64.8045	51.7318	amphilophus_citrinellus	ENSACIP00000008924	71.3407	56.9496
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	64.6927	50.838	hucho_hucho	ENSHHUP00000005754	68.6833	53.9739
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	13.1844	11.2849	hucho_hucho	ENSHHUP00000018122	86.1314	73.7226
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	71.3966	55.5307	anabas_testudineus	ENSATEP00000007065	69.6078	54.1394
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	12.9609	11.1732	gasterosteus_aculeatus	ENSGACP00000024126	84.6715	72.9927
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	64.8045	52.514	tetraodon_nigroviridis	ENSTNIP00000011816	71.9603	58.3127
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	12.2905	6.25698	saccharomyces_cerevisiae	YGL169W	25.8216	13.1455
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	18.2123	16.2011	oryzias_javanicus	ENSOJAP00000003049	67.0782	59.6708
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.3855	54.6369	amphiprion_ocellaris	ENSAOCP00000024265	70.6485	55.6314
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.6089	55.5307	maylandia_zebra	ENSMZEP00005015259	71.0376	56.6705
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.2793	56.3129	cyprinus_carpio_carpio	ENSCCRP00000055594	71.5586	57.3379
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.5028	56.9832	cyprinus_carpio_carpio	ENSCCRP00000054421	71.9498	58.1528
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.2793	55.1955	larimichthys_crocea	ENSLCRP00005029280	71.1538	55.8824
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	71.2849	57.7654	scleropages_formosus	ENSSFOP00015016945	72.9143	59.0857
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	20.3352	17.095	oryzias_sinensis	ENSOSIP00000000537	73.9837	62.1951
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.4972	54.7486	amphiprion_percula	ENSAPEP00000020601	70.7622	55.7452
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	71.8436	57.8771	denticeps_clupeoides	ENSDCDP00000013317	71.9239	57.9418
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.6145	54.1899	betta_splendens	ENSBSLP00000035562	71.7367	55.0511
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	68.7151	55.1955	paramormyrops_kingsleyae	ENSPKIP00000005996	73.2143	58.8095
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.4972	55.419	pundamilia_nyererei	ENSPNYP00000000331	70.9236	56.5564
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	69.4972	55.6425	cynoglossus_semilaevis	ENSCSEP00000023290	70.7622	56.6553
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	16.4246	13.9665	seriola_lalandi_dorsalis	ENSSLDP00000010925	74.6193	63.4518
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	70.0559	56.0894	seriola_lalandi_dorsalis	ENSSLDP00000010852	71.3311	57.1104
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	73.5196	60.1117	leptobrachium_leishanense	ENSLLEP00000018106	75.2	61.4857
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	73.4078	60	leptobrachium_leishanense	ENSLLEP00000041366	75.0857	61.3714
ENSCJPG00005016919	coturnix_japonica	ENSCJPP00005021125	73.4078	60	leptobrachium_leishanense	ENSLLEP00000042757	75.0857	61.3714

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression