RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSCHOG00000013177	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	11996 bases	Strand	Minus strand
Position	GeneScaffold_3081 : 344 - 12339	RNA binding domain	Agenet , KH_1 , KH_9 , FXMRP1_C_core
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSCHOP00000011677	Agenet	PF05641	4.5e-10	1
ENSCHOP00000011677	KH_1	PF00013	1.1e-10	2
ENSCHOP00000011677	KH_9	PF17904	8.2e-21	3
ENSCHOP00000011677	FXMRP1_C_core	PF12235	2e-26	4

Showing 1 to 4 of 4 entries

Transcripts

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Name	Transcript ID	bp	Protein	Translation ID
-	ENSCHOT00000013223	2013	670aa	ENSCHOP00000011677

Showing 1 to 1 of 1 entries

Gene Model

Click here to download ENSCHOG00000013177's gene model file

Protein-Protein Interaction (PPI)

Click here to download ENSCHOG00000013177's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000005607	23.6967	20.8531	choloepus_hoffmanni	ENSCHOP00000011677	14.9254	13.1343
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011407	52.1459	46.5665	choloepus_hoffmanni	ENSCHOP00000011677	36.2687	32.3881

Showing 1 to 2 of 2 entries

Orthologs

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Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011677	56.5672	55.5224	ornithorhynchus_anatinus	ENSOANP00000051306	55.5718	54.5455
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011677	56.5672	56.1194	sarcophilus_harrisii	ENSSHAP00000018466	56.7365	56.2874
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011677	59.5522	59.1045	cercocebus_atys	ENSCATP00000033775	59.2868	58.841
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011677	59.5522	59.1045	pan_troglodytes	ENSPTRP00000014831	59.2868	58.841
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011677	59.5522	59.1045	homo_sapiens	ENSP00000250113	59.2868	58.841
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011677	59.403	58.9552	ailuropoda_melanoleuca	ENSAMEP00000017743	59.1382	58.6924
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011677	58.0597	57.3134	mandrillus_leucophaeus	ENSMLEP00000021157	58.5843	57.8313
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011677	59.5522	59.1045	papio_anubis	ENSPANP00000019639	59.2868	58.841
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011677	59.7015	59.5522	equus_asinus	ENSEASP00005028388	59.4354	59.2868
ENSCHOG00000013177	choloepus_hoffmanni	ENSCHOP00000011677	59.5522	59.1045	gorilla_gorilla	ENSGGOP00000022274	59.2868	58.841

Showing 1 to 10 of 191 entries

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Contents

Description
RBDs
Transcripts
Gene Model
PPI
Paralogs
Orthologs