RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCGOG00000003282	Gene ID	115006795	Accession	-
Symbol		Alias	-	Full Name	elongation factor 2-like
Status	Confidence	Length	8430 bases	Strand	Plus strand
Position	4 : 23590991 - 23599420	RNA binding domain	GTP_EFTU , EFG_IV , MMR_HSR1 , GTP_EFTU_D2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCGOP00000007811	GTP_EFTU	PF00009	6.5e-66	1
ENSCGOP00000007811	EFG_IV	PF03764	3.1e-31	2
ENSCGOP00000007811	MMR_HSR1	PF01926	2.1e-05	3
ENSCGOP00000007811	GTP_EFTU_D2	PF03144	1e-09	4
ENSCGOP00000007561	GTP_EFTU	PF00009	3.2e-65	1
ENSCGOP00000007561	EFG_IV	PF03764	3.4e-31	2
ENSCGOP00000007561	MMR_HSR1	PF01926	2.3e-05	3
ENSCGOP00000007561	GTP_EFTU_D2	PF03144	1.3e-09	4
ENSCGOP00000007565	GTP_EFTU	PF00009	3.2e-65	1
ENSCGOP00000007565	EFG_IV	PF03764	3.4e-31	2
ENSCGOP00000007565	MMR_HSR1	PF01926	2.3e-05	3
ENSCGOP00000007565	GTP_EFTU_D2	PF03144	1.3e-09	4
ENSCGOP00000007775	GTP_EFTU	PF00009	9.7e-62	1
ENSCGOP00000007775	EFG_IV	PF03764	3.1e-31	2
ENSCGOP00000007775	MMR_HSR1	PF01926	2.1e-05	3
ENSCGOP00000007775	GTP_EFTU_D2	PF03144	1.1e-09	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCGOT00000008189	3966	858aa	ENSCGOP00000007561
-	ENSCGOT00000008193	2577	858aa	ENSCGOP00000007565
-	ENSCGOT00000008426	2421	806aa	ENSCGOP00000007775
-	ENSCGOT00000008465	2400	799aa	ENSCGOP00000007811

Gene Model

Click here to download ENSCGOG00000003282's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCGOG00000003282's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000035222	92.2274	85.8469	cottoperca_gobio	ENSCGOP00000007561	92.6573	86.2471
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000021183	33.1551	18.5829	cottoperca_gobio	ENSCGOP00000007561	28.9044	16.2005
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000019086	29.148	15.0224	cottoperca_gobio	ENSCGOP00000007561	15.1515	7.80886
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007735	21.6578	8.95722	cottoperca_gobio	ENSCGOP00000007561	18.8811	7.80886
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000044326	40.2626	24.2888	cottoperca_gobio	ENSCGOP00000007561	21.4452	12.9371
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000051879	23.913	13.0435	cottoperca_gobio	ENSCGOP00000007561	19.2308	10.4895
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000048144	25.4701	12.8205	cottoperca_gobio	ENSCGOP00000007561	17.366	8.74126
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000034941	36.3239	19.6937	cottoperca_gobio	ENSCGOP00000007561	19.3473	10.4895
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000022284	38.5757	22.7003	cottoperca_gobio	ENSCGOP00000007561	30.303	17.8322
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000014208	24.7392	12.9657	cottoperca_gobio	ENSCGOP00000007561	19.3473	10.1399
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000026888	27.2727	14.6853	cottoperca_gobio	ENSCGOP00000007561	18.1818	9.79021
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000049983	52.1112	33.0587	cottoperca_gobio	ENSCGOP00000007561	58.9744	37.4126
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000039503	36.9231	22.5	cottoperca_gobio	ENSCGOP00000007561	22.3776	13.6364
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000031386	34.492	18.4492	cottoperca_gobio	ENSCGOP00000007561	15.035	8.04196
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000030424	40.501	25.261	cottoperca_gobio	ENSCGOP00000007561	22.6107	14.1026
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000018734	21.4168	10.3789	cottoperca_gobio	ENSCGOP00000007561	15.1515	7.34266
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000000845	21.911	10.3789	cottoperca_gobio	ENSCGOP00000007561	15.5012	7.34266
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000027299	19.6568	9.9844	cottoperca_gobio	ENSCGOP00000007561	14.6853	7.45921
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000047215	19.6429	9.82143	cottoperca_gobio	ENSCGOP00000007561	15.3846	7.69231
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000010687	30.9677	18.5806	cottoperca_gobio	ENSCGOP00000007561	27.972	16.7832

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.6876	89.9767	fundulus_heteroclitus	ENSFHEP00000011282	95.6876	89.9767
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	94.8718	89.627	poecilia_reticulata	ENSPREP00000012263	94.8718	89.627
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.1049	89.8601	xiphophorus_maculatus	ENSXMAP00000030988	95.1049	89.8601
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	94.9883	90.3263	cyclopterus_lumpus	ENSCLMP00005000561	94.6574	90.0116
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.338	89.9767	oreochromis_niloticus	ENSONIP00000053649	95.338	89.9767
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	96.1538	89.3939	oryzias_latipes	ENSORLP00000005813	96.1538	89.3939
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.338	89.9767	astatotilapia_calliptera	ENSACLP00000034886	95.338	89.9767
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.2214	90.7925	lates_calcarifer	ENSLCAP00010007749	94.5602	90.162
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.9207	91.6084	sparus_aurata	ENSSAUP00010014229	95.6977	91.3953
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.2214	89.8601	haplochromis_burtoni	ENSHBUP00000005002	94.5602	89.2361
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	97.2028	93.007	dicentrarchus_labrax	ENSDLAP00005015034	96.5278	92.3611
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.5711	89.8601	oryzias_melastigma	ENSOMEP00000029633	95.5711	89.8601
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.338	89.8601	neolamprologus_brichardi	ENSNBRP00000014671	95.338	89.8601
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	94.9883	89.627	poecilia_formosa	ENSPFOP00000003077	94.9883	89.627
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	93.9394	87.8788	takifugu_rubripes	ENSTRUP00000045946	93.3951	87.3696
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.8042	91.0256	seriola_dumerili	ENSSDUP00000006963	95.6927	90.9197
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.2214	89.1608	cyprinodon_variegatus	ENSCVAP00000004147	94.6698	88.6443
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.5711	90.5594	gasterosteus_aculeatus	ENSGACP00000016980	95.5711	90.5594
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.2214	89.8601	pundamilia_nyererei	ENSPNYP00000023083	95.2214	89.8601
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.1049	89.8601	poecilia_latipinna	ENSPLAP00000023940	95.1049	89.8601
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.5711	89.5105	stegastes_partitus	ENSSPAP00000029118	95.5711	89.5105
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	96.0373	90.676	anabas_testudineus	ENSATEP00000035133	96.0373	90.676
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	94.9883	89.2774	amphilophus_citrinellus	ENSACIP00000019618	94.9883	89.2774
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.1049	89.7436	amphiprion_percula	ENSAPEP00000010438	95.1049	89.7436
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.1049	89.7436	amphiprion_ocellaris	ENSAOCP00000013087	95.1049	89.7436
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.4545	89.9767	maylandia_zebra	ENSMZEP00005009394	95.4545	89.9767
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	90.5594	83.683	hippocampus_comes	ENSHCOP00000017563	83.5484	77.2043
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	94.5221	88.4615	scophthalmus_maximus	ENSSMAP00000018925	94.4121	88.3586
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.338	89.5105	kryptolebias_marmoratus	ENSKMAP00000004822	95.338	89.5105
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	96.5035	91.7249	larimichthys_crocea	ENSLCRP00005036908	95.8333	91.088
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	96.0373	89.2774	oryzias_sinensis	ENSOSIP00000018296	95.7027	88.9663
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	93.007	84.965	cynoglossus_semilaevis	ENSCSEP00000004357	92.7907	84.7674
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.4545	89.8601	nothobranchius_furzeri	ENSNFUP00015050069	94.1379	88.6207
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.8042	91.0256	seriola_lalandi_dorsalis	ENSSLDP00000012290	95.6927	90.9197
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.6876	90.5594	labrus_bergylta	ENSLBEP00000021960	95.6876	90.5594
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.4545	89.627	betta_splendens	ENSBSLP00000001870	94.6821	88.9017
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	96.5035	92.3077	sander_lucioperca	ENSSLUP00000030183	96.0557	91.8793
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	95.9207	90.5594	mastacembelus_armatus	ENSMAMP00000065064	95.4756	90.1392
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	80.5361	73.6597	tetraodon_nigroviridis	ENSTNIP00000013544	92.2563	84.3792
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	94.8718	89.5105	acanthochromis_polyacanthus	ENSAPOP00000022987	94.8718	89.5105
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	85.4312	75.8741	caenorhabditis_elegans	F25H5.4a.2	86.0329	76.4084
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	85.3147	75.641	drosophila_melanogaster	FBpp0305182	86.7299	76.8957
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	15.8508	13.6364	ciona_intestinalis	ENSCINP00000019007	83.9506	72.2222
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	12.704	11.655	ciona_intestinalis	ENSCINP00000017752	93.1624	85.4701
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	31.1189	27.5058	ciona_intestinalis	ENSCINP00000019009	80.1802	70.8709
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	81.0023	71.5618	ciona_intestinalis	ENSCINP00000019008	83.134	73.445
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	92.4242	86.3636	gadus_morhua	ENSGMOP00000061752	92.4242	86.3636
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	83.683	74.0093	ciona_savignyi	ENSCSAVP00000006629	84.3713	74.6181
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	77.7389	66.2005	saccharomyces_cerevisiae	YOR133W	79.2161	67.4584
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	77.7389	66.2005	saccharomyces_cerevisiae	YDR385W	79.2161	67.4584
ENSCGOG00000003282	cottoperca_gobio	ENSCGOP00000007561	94.5221	89.3939	myripristis_murdjan	ENSMMDP00005007843	93.9745	88.876

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression