RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCDRG00005013320	Gene ID	105093936	Accession	-
Symbol		Alias	-	Full Name	ribosomal protein L39
Status	Confidence	Length	3761 bases	Strand	Minus strand
Position	X : 92796559 - 92800319	RNA binding domain	Ribosomal_L39
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCDRP00005019078	Ribosomal_L39	PF00832	9.7e-24	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCDRT00005021051	489	51aa	ENSCDRP00005019078

Gene Model

Click here to download ENSCDRG00005013320's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCDRG00005013320's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005012364	92.1569	88.2353	camelus_dromedarius	ENSCDRP00005019078	92.1569	88.2353
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005000023	90.1961	86.2745	camelus_dromedarius	ENSCDRP00005019078	90.1961	86.2745
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005017297	94.1176	88.2353	camelus_dromedarius	ENSCDRP00005019078	94.1176	88.2353
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005025100	90	88	camelus_dromedarius	ENSCDRP00005019078	88.2353	86.2745
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005029103	96.0784	94.1176	camelus_dromedarius	ENSCDRP00005019078	96.0784	94.1176

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	ornithorhynchus_anatinus	ENSOANP00000038503	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	dasypus_novemcinctus	ENSDNOP00000015995	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	callithrix_jacchus	ENSCJAP00000092805	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	cercocebus_atys	ENSCATP00000004740	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	macaca_fascicularis	ENSMFAP00000031578	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	macaca_mulatta	ENSMMUP00000024182	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	macaca_nemestrina	ENSMNEP00000029437	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	homo_sapiens	ENSP00000355315	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	loxodonta_africana	ENSLAFP00000018642	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	monodelphis_domestica	ENSMODP00000048916	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	88.2353	88.2353	phascolarctos_cinereus	ENSPCIP00000004770	76.2712	76.2712
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	mus_pahari	MGP_PahariEiJ_P0088863	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	saimiri_boliviensis_boliviensis	ENSSBOP00000006031	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	bos_taurus	ENSBTAP00000062104	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	rhinopithecus_bieti	ENSRBIP00000002860	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	chlorocebus_sabaeus	ENSCSAP00000019248	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	octodon_degus	ENSODEP00000002808	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	canis_lupus_dingo	ENSCAFP00020030324	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	ictidomys_tridecemlineatus	ENSSTOP00000019328	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	rhinopithecus_roxellana	ENSRROP00000003381	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	mus_spretus	MGP_SPRETEiJ_P0094971	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	94.1176	84.3137	ciona_intestinalis	ENSCINP00000029714	94.1176	84.3137
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	lepisosteus_oculatus	ENSLOCP00000018749	98.0392	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	clupea_harengus	ENSCHAP00000045129	86.2069	84.4828
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	danio_rerio	ENSDARP00000052760	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	92.1569	90.1961	carassius_auratus	ENSCARP00000013018	92.1569	90.1961
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	92.1569	90.1961	carassius_auratus	ENSCARP00000013589	92.1569	90.1961
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	90.1961	90.1961	astyanax_mexicanus	ENSAMXP00000000203	92	92
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	ictalurus_punctatus	ENSIPUP00000028479	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	electrophorus_electricus	ENSEEEP00000030214	92.5926	90.7407
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	esox_lucius	ENSELUP00000021312	50	50
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	oncorhynchus_kisutch	ENSOKIP00005063249	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	oncorhynchus_kisutch	ENSOKIP00005073017	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	oncorhynchus_mykiss	ENSOMYP00000103686	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	salmo_salar	ENSSSAP00000004375	29.5858	29.5858
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	salmo_trutta	ENSSTUP00000004093	54.2553	54.2553
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	gadus_morhua	ENSGMOP00000001715	84.7458	83.0508
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	fundulus_heteroclitus	ENSFHEP00000031827	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	poecilia_reticulata	ENSPREP00000018097	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	xiphophorus_maculatus	ENSXMAP00000013713	86.2069	86.2069
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	oryzias_latipes	ENSORLP00000030883	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	cyclopterus_lumpus	ENSCLMP00005009428	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	oreochromis_niloticus	ENSONIP00000058926	98.0769	96.1538
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	haplochromis_burtoni	ENSHBUP00000031620	90.9091	90.9091
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	astatotilapia_calliptera	ENSACLP00000002419	90.9091	90.9091
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	lates_calcarifer	ENSLCAP00010031386	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	lates_calcarifer	ENSLCAP00010053876	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	sparus_aurata	ENSSAUP00010043428	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	chrysemys_picta_bellii	ENSCPBP00000029358	79.3651	77.7778
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	laticauda_laticaudata	ENSLLTP00000012777	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	notechis_scutatus	ENSNSUP00000013419	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	anas_platyrhynchos_platyrhynchos	ENSAPLP00000029979	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	pseudonaja_textilis	ENSPTXP00000027567	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	meleagris_gallopavo	ENSMGAP00000007887	83.3333	81.6667
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	gallus_gallus	ENSGALP00010018072	66.6667	65.3333
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	parus_major	ENSPMJP00000014992	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	serinus_canaria	ENSSCAP00000023703	100	98
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	kryptolebias_marmoratus	ENSKMAP00000027339	68	68
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	gasterosteus_aculeatus	ENSGACP00000023044	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	oryzias_javanicus	ENSOJAP00000038131	54.9451	54.9451
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	scophthalmus_maximus	ENSSMAP00000056361	98.0769	96.1538
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	90.1961	88.2353	erpetoichthys_calabaricus	ENSECRP00000009790	90.1961	88.2353
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	cyprinodon_variegatus	ENSCVAP00000003775	60.7143	60.7143
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	pygocentrus_nattereri	ENSPNAP00000015517	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	96.0784	96.0784	amphiprion_percula	ENSAPEP00000007653	94.2308	94.2308
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	taeniopygia_guttata	ENSTGUP00000003511	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	96.0784	anolis_carolinensis	ENSACAP00000003505	94.4444	90.7407
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	90.1961	90.1961	sinocyclocheilus_grahami	ENSSGRP00000110099	90.1961	90.1961
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	oryzias_sinensis	ENSOSIP00000006041	92.5926	92.5926
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	hippocampus_comes	ENSHCOP00000013793	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	94.1176	94.1176	nothobranchius_furzeri	ENSNFUP00015000239	94.1176	94.1176
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	amphiprion_ocellaris	ENSAOCP00000007439	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	amphilophus_citrinellus	ENSACIP00000017488	98.0769	96.1538
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	terrapene_carolina_triunguis	ENSTMTP00000009184	79.3651	77.7778
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	takifugu_rubripes	ENSTRUP00000027356	98.0769	96.1538
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	pelodiscus_sinensis	ENSPSIP00000006379	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	poecilia_formosa	ENSPFOP00000017508	81.9672	81.9672
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	gopherus_evgoodei	ENSGEVP00005015068	79.3651	77.7778
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	cottoperca_gobio	ENSCGOP00000035450	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	neolamprologus_brichardi	ENSNBRP00000014993	98.0769	96.1538
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	labrus_bergylta	ENSLBEP00000038474	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	88.2353	84.3137	salvator_merianae	ENSSMRP00000016176	88.2353	84.3137
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	anser_brachyrhynchus	ENSABRP00000003120	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	coturnix_japonica	ENSCJPP00005023802	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	aquila_chrysaetos_chrysaetos	ENSACCP00020014547	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	betta_splendens	ENSBSLP00000051281	100	98
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	anabas_testudineus	ENSATEP00000053150	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	poecilia_latipinna	ENSPLAP00000003599	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	stegastes_partitus	ENSSPAP00000013259	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	sander_lucioperca	ENSSLUP00000049354	42.5	42.5
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	96.0784	94.1176	dicentrarchus_labrax	ENSDLAP00005035820	96.0784	94.1176
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	myripristis_murdjan	ENSMMDP00005032979	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	96.0784	94.1176	larimichthys_crocea	ENSLCRP00005047050	89.0909	87.2727
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	acanthochromis_polyacanthus	ENSAPOP00000010358	94.3396	94.3396
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	88.2353	88.2353	seriola_lalandi_dorsalis	ENSSLDP00000003966	97.8261	97.8261
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	94.1176	94.1176	cyprinus_carpio_carpio	ENSCCRP00000003015	94.1176	94.1176
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	cyprinus_carpio_carpio	ENSCCRP00000038681	87.7193	85.9649
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	100	oncorhynchus_tshawytscha	ENSOTSP00005005689	54.2553	54.2553
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	naja_naja	ENSNNAP00000015099	46.3636	45.4545
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	oryzias_melastigma	ENSOMEP00000013268	87.7193	87.7193
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	88.2353	84.3137	cynoglossus_semilaevis	ENSCSEP00000003107	91.8367	87.7551
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	96.0784	96.0784	paramormyrops_kingsleyae	ENSPKIP00000000873	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	maylandia_zebra	ENSMZEP00005010452	90.9091	90.9091
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	denticeps_clupeoides	ENSDCDP00000039864	94.3396	94.3396
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	92.1569	84.3137	ciona_savignyi	ENSCSAVP00000006665	92.1569	84.3137
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	hucho_hucho	ENSHHUP00000083759	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	100	98.0392	strigops_habroptila	ENSSHBP00005017271	100	98.0392
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	98.0392	mastacembelus_armatus	ENSMAMP00000029759	100	100
ENSCDRG00005013320	camelus_dromedarius	ENSCDRP00005019078	98.0392	96.0784	ficedula_albicollis	ENSFALP00000001640	98.0392	96.0784

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression