Description

Ensembl ID ENSCCRG00020048445 Gene ID Accession -
Symbol Alias - Full Name fragile X mental retardation, autosomal homolog 1
Status Confidence Length 13532 bases Strand Plus strand
Position SAUJ01047119.1 : 1378439 - 1391970 RNA binding domain Agenet , FXR_C1 , KH_1 , KH_9 , FXMRP1_C_core
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00020117146 Agenet PF05641 1.4e-14 1
ENSCCRP00020117146 Agenet PF05641 1.4e-14 2
ENSCCRP00020117146 FXR_C1 PF16096 1.7e-37 3
ENSCCRP00020117146 KH_1 PF00013 1.8e-17 4
ENSCCRP00020117146 KH_1 PF00013 1.8e-17 5
ENSCCRP00020117146 KH_9 PF17904 3.3e-33 6
ENSCCRP00020117146 FXMRP1_C_core PF12235 9.3e-44 7
ENSCCRP00020117144 Agenet PF05641 2.5e-13 1
ENSCCRP00020117144 Agenet PF05641 2.5e-13 2
ENSCCRP00020117144 FXR_C1 PF16096 3.8e-37 3
ENSCCRP00020117144 KH_1 PF00013 2.1e-17 4
ENSCCRP00020117144 KH_1 PF00013 2.1e-17 5
ENSCCRP00020117144 KH_9 PF17904 3.6e-33 6
ENSCCRP00020117144 FXMRP1_C_core PF12235 9.9e-44 7
ENSCCRP00020117563 Agenet PF05641 1e-10 1
ENSCCRP00020117563 FXR_C1 PF16096 1.6e-37 2
ENSCCRP00020117563 KH_1 PF00013 1.4e-17 3
ENSCCRP00020117563 KH_1 PF00013 1.4e-17 4
ENSCCRP00020117563 KH_9 PF17904 2.9e-33 5
ENSCCRP00020117563 FXMRP1_C_core PF12235 1.2e-43 6
ENSCCRP00020117510 Agenet PF05641 1.2e-10 1
ENSCCRP00020117510 FXR_C1 PF16096 1.5e-37 2
ENSCCRP00020117510 KH_1 PF00013 1.5e-17 3
ENSCCRP00020117510 KH_1 PF00013 1.5e-17 4
ENSCCRP00020117510 KH_9 PF17904 1.6e-13 5
ENSCCRP00020117510 FXMRP1_C_core PF12235 7.5e-31 6
ENSCCRP00020117510 FXMRP1_C_core PF12235 7.5e-31 7
ENSCCRP00020117564 Agenet PF05641 1.2e-10 1
ENSCCRP00020117564 FXR_C1 PF16096 1.7e-37 2
ENSCCRP00020117564 KH_1 PF00013 1.6e-17 3
ENSCCRP00020117564 KH_1 PF00013 1.6e-17 4
ENSCCRP00020117564 KH_9 PF17904 3.1e-33 5
ENSCCRP00020117564 FXMRP1_C_core PF12235 9.8e-44 6
ENSCCRP00020117508 Agenet PF05641 1.4e-10 1
ENSCCRP00020117508 FXR_C1 PF16096 1.6e-37 2
ENSCCRP00020117508 KH_1 PF00013 1.7e-17 3
ENSCCRP00020117508 KH_1 PF00013 1.7e-17 4
ENSCCRP00020117508 KH_9 PF17904 3.3e-33 5
ENSCCRP00020117508 FXMRP1_C_core PF12235 7.8e-44 6
ENSCCRP00020117148 Agenet PF05641 1.4e-10 1
ENSCCRP00020117148 FXR_C1 PF16096 1.9e-37 2
ENSCCRP00020117148 KH_1 PF00013 1.8e-17 3
ENSCCRP00020117148 KH_1 PF00013 1.8e-17 4
ENSCCRP00020117148 KH_9 PF17904 3.4e-33 5
ENSCCRP00020117148 FXMRP1_C_core PF12235 7.9e-44 6
ENSCCRP00020117552 Agenet PF05641 1.7e-10 1
ENSCCRP00020117552 FXR_C1 PF16096 1.8e-37 2
ENSCCRP00020117552 KH_1 PF00013 1.8e-16 3
ENSCCRP00020117552 KH_1 PF00013 1.8e-16 4
ENSCCRP00020117552 KH_9 PF17904 3.2e-33 5
ENSCCRP00020117552 FXMRP1_C_core PF12235 9.3e-44 6
ENSCCRP00020117507 Agenet PF05641 1.1e-09 1
ENSCCRP00020117507 FXR_C1 PF16096 3.4e-37 2
ENSCCRP00020117507 KH_1 PF00013 1.9e-17 3
ENSCCRP00020117507 KH_1 PF00013 1.9e-17 4
ENSCCRP00020117507 KH_9 PF17904 3.5e-33 5
ENSCCRP00020117507 FXMRP1_C_core PF12235 1.1e-30 6
ENSCCRP00020117507 FXMRP1_C_core PF12235 1.1e-30 7
ENSCCRP00020117389 Agenet PF05641 1.8e-09 1
ENSCCRP00020117389 FXR_C1 PF16096 3.9e-37 2
ENSCCRP00020117389 KH_1 PF00013 2.1e-17 3
ENSCCRP00020117389 KH_1 PF00013 2.1e-17 4
ENSCCRP00020117389 KH_9 PF17904 3.7e-33 5
ENSCCRP00020117389 FXMRP1_C_core PF12235 1.2e-43 6

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00020127719 2977 659aa ENSCCRP00020117144
- ENSCCRT00020127721 2902 634aa ENSCCRP00020117146
- ENSCCRT00020127723 1845 614aa ENSCCRP00020117148
- ENSCCRT00020127974 1950 649aa ENSCCRP00020117389
- ENSCCRT00020128099 1890 629aa ENSCCRP00020117507
- ENSCCRT00020128100 1836 611aa ENSCCRP00020117508
- ENSCCRT00020128102 1698 565aa ENSCCRP00020117510
- ENSCCRT00020128145 1788 595aa ENSCCRP00020117552
- ENSCCRT00020128156 1680 559aa ENSCCRP00020117563
- ENSCCRT00020128157 1758 585aa ENSCCRP00020117564

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020048445

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020048445

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression