Description

Ensembl ID ENSCCRG00020029714 Gene ID Accession -
Symbol Alias - Full Name fragile X mental retardation, autosomal homolog 1
Status Confidence Length 12797 bases Strand Plus strand
Position SAUJ01005122.1 : 282084 - 294880 RNA binding domain Agenet , FXR_C1 , KH_1 , KH_9 , FXMRP1_C_core
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00020088237 Agenet PF05641 3.3e-15 1
ENSCCRP00020088237 Agenet PF05641 3.3e-15 2
ENSCCRP00020088237 FXR_C1 PF16096 7.3e-38 3
ENSCCRP00020088237 KH_1 PF00013 4.1e-17 4
ENSCCRP00020088237 KH_1 PF00013 4.1e-17 5
ENSCCRP00020088237 KH_9 PF17904 8.3e-34 6
ENSCCRP00020088237 FXMRP1_C_core PF12235 7.6e-53 7
ENSCCRP00020089570 Agenet PF05641 1.3e-11 1
ENSCCRP00020089570 FXR_C1 PF16096 2.9e-38 2
ENSCCRP00020089570 KH_1 PF00013 2.8e-17 3
ENSCCRP00020089570 KH_1 PF00013 2.8e-17 4
ENSCCRP00020089570 KH_9 PF17904 7.5e-14 5
ENSCCRP00020089570 FXMRP1_C_core PF12235 1.3e-34 6
ENSCCRP00020089570 FXMRP1_C_core PF12235 1.3e-34 7
ENSCCRP00020089569 Agenet PF05641 1.9e-11 1
ENSCCRP00020089569 FXR_C1 PF16096 6.6e-38 2
ENSCCRP00020089569 KH_1 PF00013 3.7e-17 3
ENSCCRP00020089569 KH_1 PF00013 3.7e-17 4
ENSCCRP00020089569 KH_9 PF17904 7.7e-34 5
ENSCCRP00020089569 FXMRP1_C_core PF12235 1.9e-34 6
ENSCCRP00020089569 FXMRP1_C_core PF12235 1.9e-34 7
ENSCCRP00020088685 Agenet PF05641 2.1e-11 1
ENSCCRP00020088685 FXR_C1 PF16096 7.2e-38 2
ENSCCRP00020088685 KH_1 PF00013 4.2e-17 3
ENSCCRP00020088685 KH_1 PF00013 4.2e-17 4
ENSCCRP00020088685 KH_9 PF17904 8.2e-34 5
ENSCCRP00020088685 FXMRP1_C_core PF12235 7.5e-53 6
ENSCCRP00020088474 Agenet PF05641 3.7e-11 1
ENSCCRP00020088474 FXR_C1 PF16096 3.4e-38 2
ENSCCRP00020088474 KH_1 PF00013 3.7e-17 3
ENSCCRP00020088474 KH_1 PF00013 3.7e-17 4
ENSCCRP00020088474 KH_9 PF17904 7.5e-34 5
ENSCCRP00020088474 FXMRP1_C_core PF12235 6.9e-53 6
ENSCCRP00020088364 Agenet PF05641 5.6e-11 1
ENSCCRP00020088364 FXR_C1 PF16096 3.7e-38 2
ENSCCRP00020088364 KH_1 PF00013 3.4e-17 3
ENSCCRP00020088364 KH_1 PF00013 3.4e-17 4
ENSCCRP00020088364 KH_9 PF17904 8.4e-34 5
ENSCCRP00020088364 FXMRP1_C_core PF12235 6.5e-53 6
ENSCCRP00020088533 Agenet PF05641 6.3e-11 1
ENSCCRP00020088533 FXR_C1 PF16096 7.2e-38 2
ENSCCRP00020088533 KH_1 PF00013 4.1e-17 3
ENSCCRP00020088533 KH_1 PF00013 4.1e-17 4
ENSCCRP00020088533 KH_9 PF17904 8.1e-34 5
ENSCCRP00020088533 FXMRP1_C_core PF12235 7.4e-53 6
ENSCCRP00020088471 Agenet PF05641 2.3e-08 1
ENSCCRP00020088471 FXR_C1 PF16096 3.6e-38 2
ENSCCRP00020088471 KH_1 PF00013 3.3e-17 3
ENSCCRP00020088471 KH_1 PF00013 3.3e-17 4
ENSCCRP00020088471 KH_9 PF17904 8.4e-34 5
ENSCCRP00020088471 FXMRP1_C_core PF12235 6.4e-53 6
ENSCCRP00020088517 Agenet PF05641 2.4e-08 1
ENSCCRP00020088517 FXR_C1 PF16096 3.3e-38 2
ENSCCRP00020088517 KH_1 PF00013 3.3e-17 3
ENSCCRP00020088517 KH_1 PF00013 3.3e-17 4
ENSCCRP00020088517 KH_9 PF17904 7.1e-34 5
ENSCCRP00020088517 FXMRP1_C_core PF12235 6.6e-53 6
ENSCCRP00020079650 FXR_C1 PF16096 3.7e-38 1
ENSCCRP00020079650 KH_1 PF00013 8e-14 2
ENSCCRP00020079650 KH_9 PF17904 8.8e-34 3
ENSCCRP00020079650 FXMRP1_C_core PF12235 7.5e-53 4

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00020087292 3068 668aa ENSCCRP00020079650
- ENSCCRT00020096486 2191 669aa ENSCCRP00020088237
- ENSCCRT00020096623 1839 612aa ENSCCRP00020088364
- ENSCCRT00020096748 1809 602aa ENSCCRP00020088471
- ENSCCRT00020096751 2071 634aa ENSCCRP00020088474
- ENSCCRT00020096794 1845 614aa ENSCCRP00020088517
- ENSCCRT00020096810 2143 658aa ENSCCRP00020088533
- ENSCCRT00020096968 2158 663aa ENSCCRP00020088685
- ENSCCRT00020097924 2065 632aa ENSCCRP00020089569
- ENSCCRT00020097925 1870 567aa ENSCCRP00020089570

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020029714

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020029714

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression