| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSCCRG00020028819 | Gene ID |
|
Accession |
- |
| Symbol |
|
Alias |
- |
Full Name |
SMG6 nonsense mediated mRNA decay factor |
| Status |
Confidence |
Length |
17153 bases |
Strand |
Minus strand |
| Position |
SAUJ01016134.1 : 2849811 - 2866963 |
RNA binding domain |
EST1 , PIN_4 , EST1_DNA_bind |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSCCRP00020062258 |
EST1 |
PF10374 |
5e-14 |
1 |
| ENSCCRP00020062258 |
PIN_4 |
PF13638 |
1.5e-20 |
2 |
| ENSCCRP00020062258 |
EST1_DNA_bind |
PF10373 |
9.4e-59 |
3 |
| ENSCCRP00020062217 |
EST1 |
PF10374 |
5.8e-14 |
1 |
| ENSCCRP00020062217 |
PIN_4 |
PF13638 |
1.3e-20 |
2 |
| ENSCCRP00020062217 |
EST1_DNA_bind |
PF10373 |
1.1e-50 |
3 |
| ENSCCRP00020062217 |
EST1_DNA_bind |
PF10373 |
1.1e-50 |
4 |
| ENSCCRP00020062211 |
EST1 |
PF10374 |
5.8e-14 |
1 |
| ENSCCRP00020062211 |
PIN_4 |
PF13638 |
1.4e-20 |
2 |
| ENSCCRP00020062211 |
EST1_DNA_bind |
PF10373 |
5.6e-58 |
3 |
| ENSCCRP00020062128 |
EST1 |
PF10374 |
6e-14 |
1 |
| ENSCCRP00020062128 |
PIN_4 |
PF13638 |
1.4e-20 |
2 |
| ENSCCRP00020062128 |
EST1_DNA_bind |
PF10373 |
5.9e-58 |
3 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| - |
ENSCCRT00020068407 |
4975 |
1582aa |
ENSCCRP00020062128 |
| - |
ENSCCRT00020068497 |
4909 |
1542aa |
ENSCCRP00020062211 |
| - |
ENSCCRT00020068503 |
4858 |
1543aa |
ENSCCRP00020062217 |
| - |
ENSCCRT00020068548 |
4194 |
1397aa |
ENSCCRP00020062258 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSCCRG00020028819 | | | | | | | | |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSCCRG00020028819 | | | | | | | | |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |