Description

Ensembl ID ENSCCRG00020028819 Gene ID Accession -
Symbol Alias - Full Name SMG6 nonsense mediated mRNA decay factor
Status Confidence Length 17153 bases Strand Minus strand
Position SAUJ01016134.1 : 2849811 - 2866963 RNA binding domain EST1 , PIN_4 , EST1_DNA_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00020062258 EST1 PF10374 5e-14 1
ENSCCRP00020062258 PIN_4 PF13638 1.5e-20 2
ENSCCRP00020062258 EST1_DNA_bind PF10373 9.4e-59 3
ENSCCRP00020062217 EST1 PF10374 5.8e-14 1
ENSCCRP00020062217 PIN_4 PF13638 1.3e-20 2
ENSCCRP00020062217 EST1_DNA_bind PF10373 1.1e-50 3
ENSCCRP00020062217 EST1_DNA_bind PF10373 1.1e-50 4
ENSCCRP00020062211 EST1 PF10374 5.8e-14 1
ENSCCRP00020062211 PIN_4 PF13638 1.4e-20 2
ENSCCRP00020062211 EST1_DNA_bind PF10373 5.6e-58 3
ENSCCRP00020062128 EST1 PF10374 6e-14 1
ENSCCRP00020062128 PIN_4 PF13638 1.4e-20 2
ENSCCRP00020062128 EST1_DNA_bind PF10373 5.9e-58 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00020068407 4975 1582aa ENSCCRP00020062128
- ENSCCRT00020068497 4909 1542aa ENSCCRP00020062211
- ENSCCRT00020068503 4858 1543aa ENSCCRP00020062217
- ENSCCRT00020068548 4194 1397aa ENSCCRP00020062258

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020028819

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020028819

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression