Description

Ensembl ID ENSCCRG00020027399 Gene ID Accession -
Symbol Alias - Full Name SMG6 nonsense mediated mRNA decay factor
Status Confidence Length 32215 bases Strand Plus strand
Position SAUJ01048436.1 : 205302 - 237516 RNA binding domain EST1 , PIN_4 , EST1_DNA_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00020057720 EST1 PF10374 5.3e-14 1
ENSCCRP00020057720 PIN_4 PF13638 2.9e-08 2
ENSCCRP00020057720 EST1_DNA_bind PF10373 1e-58 3
ENSCCRP00020057719 EST1 PF10374 5.3e-14 1
ENSCCRP00020057719 PIN_4 PF13638 7.1e-21 2
ENSCCRP00020057719 EST1_DNA_bind PF10373 9.8e-59 3
ENSCCRP00020057717 EST1 PF10374 5.5e-14 1
ENSCCRP00020057717 PIN_4 PF13638 6.7e-21 2
ENSCCRP00020057717 EST1_DNA_bind PF10373 1.1e-58 3
ENSCCRP00020057714 EST1 PF10374 5.9e-14 1
ENSCCRP00020057714 PIN_4 PF13638 6.7e-21 2
ENSCCRP00020057714 EST1_DNA_bind PF10373 1.1e-58 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00020063619 7666 1609aa ENSCCRP00020057714
- ENSCCRT00020063622 6904 1582aa ENSCCRP00020057717
- ENSCCRT00020063624 6850 1546aa ENSCCRP00020057719
- ENSCCRT00020063625 4638 1545aa ENSCCRP00020057720

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020027399

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020027399

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression