Description

Ensembl ID ENSCCRG00020002281 Gene ID Accession -
Symbol Alias - Full Name SMG7 nonsense mediated mRNA decay factor
Status Confidence Length 16463 bases Strand Minus strand
Position SAUJ01039845.1 : 275544 - 292006 RNA binding domain EST1 , EST1_DNA_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00020010062 EST1 PF10374 8.1e-20 1
ENSCCRP00020010062 EST1_DNA_bind PF10373 3.3e-47 2
ENSCCRP00020009318 EST1 PF10374 8.6e-20 1
ENSCCRP00020009318 EST1_DNA_bind PF10373 3.6e-47 2
ENSCCRP00020010548 EST1 PF10374 9e-20 1
ENSCCRP00020010548 EST1_DNA_bind PF10373 3.3e-36 2
ENSCCRP00020010402 EST1 PF10374 9.5e-20 1
ENSCCRP00020010402 EST1_DNA_bind PF10373 9e-43 2
ENSCCRP00020009812 EST1 PF10374 9.7e-20 1
ENSCCRP00020009812 EST1_DNA_bind PF10373 9.2e-43 2
ENSCCRP00020010058 EST1 PF10374 9.9e-20 1
ENSCCRP00020010058 EST1_DNA_bind PF10373 3.2e-36 2
ENSCCRP00020010139 EST1 PF10374 1e-19 1
ENSCCRP00020010139 EST1_DNA_bind PF10373 2.1e-38 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00020010387 4757 1165aa ENSCCRP00020009318
- ENSCCRT00020010909 4727 1114aa ENSCCRP00020009812
- ENSCCRT00020011171 4697 1128aa ENSCCRP00020010058
- ENSCCRT00020011175 4607 1115aa ENSCCRP00020010062
- ENSCCRT00020011255 3942 1140aa ENSCCRP00020010139
- ENSCCRT00020011539 3813 1097aa ENSCCRP00020010402
- ENSCCRT00020011705 3666 1048aa ENSCCRP00020010548

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020002281

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020002281

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression