Description

Ensembl ID ENSCCRG00020001668 Gene ID Accession -
Symbol Alias - Full Name SMG5 nonsense mediated mRNA decay factor
Status Confidence Length 14723 bases Strand Minus strand
Position SAUJ01033143.1 : 12911 - 27633 RNA binding domain EST1 , PIN_4 , EST1_DNA_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00020004816 EST1 PF10374 4e-21 1
ENSCCRP00020004816 PIN_4 PF13638 1.9e-05 2
ENSCCRP00020004816 EST1_DNA_bind PF10373 3.1e-35 3
ENSCCRP00020004613 EST1 PF10374 4.1e-21 1
ENSCCRP00020004613 PIN_4 PF13638 1.9e-05 2
ENSCCRP00020004613 EST1_DNA_bind PF10373 2.5e-40 3
ENSCCRP00020004601 EST1 PF10374 4.1e-21 1
ENSCCRP00020004601 PIN_4 PF13638 1.9e-05 2
ENSCCRP00020004601 EST1_DNA_bind PF10373 1.7e-33 3
ENSCCRP00020004496 EST1 PF10374 4.6e-21 1
ENSCCRP00020004496 PIN_4 PF13638 9.2e-06 2
ENSCCRP00020004496 EST1_DNA_bind PF10373 2.8e-40 3
ENSCCRP00020004417 EST1 PF10374 4.6e-21 1
ENSCCRP00020004417 EST1_DNA_bind PF10373 7.8e-31 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00020005034 4258 1081aa ENSCCRP00020004417
- ENSCCRT00020005114 4255 1080aa ENSCCRP00020004496
- ENSCCRT00020005233 2985 994aa ENSCCRP00020004601
- ENSCCRT00020005251 2958 985aa ENSCCRP00020004613
- ENSCCRT00020005474 2910 969aa ENSCCRP00020004816

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020001668

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00020001668

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression