Description

Ensembl ID ENSCCRG00015040065 Gene ID Accession -
Symbol Alias - Full Name 5'-3' exoribonuclease 1
Status Confidence Length 18993 bases Strand Plus strand
Position SAUI01096722.1 : 2459827 - 2478819 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00015103825 SH3_12 PF18129 2.8e-18 1
ENSCCRP00015103825 XRN_N PF03159 8.4e-94 2
ENSCCRP00015103825 XRN1_D1 PF18332 2.9e-32 3
ENSCCRP00015103970 SH3_12 PF18129 3e-18 1
ENSCCRP00015103970 XRN_N PF03159 2.3e-77 2
ENSCCRP00015103970 XRN1_D1 PF18332 8.8e-31 3
ENSCCRP00015103786 SH3_12 PF18129 3.4e-18 1
ENSCCRP00015103786 XRN_N PF03159 8.1e-94 2
ENSCCRP00015103786 XRN1_D1 PF18332 3.3e-32 3
ENSCCRP00015103755 SH3_12 PF18129 3.5e-18 1
ENSCCRP00015103755 XRN_N PF03159 8.2e-94 2
ENSCCRP00015103755 XRN1_D1 PF18332 3.3e-32 3
ENSCCRP00015103785 SH3_12 PF18129 3.6e-18 1
ENSCCRP00015103785 XRN_N PF03159 4.8e-94 2
ENSCCRP00015103785 XRN1_D1 PF18332 2.4e-27 3
ENSCCRP00015103856 XRN_N PF03159 4.2e-94 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00015107099 5802 1629aa ENSCCRP00015103755
- ENSCCRT00015107129 4578 1525aa ENSCCRP00015103785
- ENSCCRT00015107130 4830 1609aa ENSCCRP00015103786
- ENSCCRT00015107169 4395 1464aa ENSCCRP00015103825
- ENSCCRT00015107200 2874 957aa ENSCCRP00015103856
- ENSCCRT00015107316 4362 1453aa ENSCCRP00015103970

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00015040065

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00015040065

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression