Description

Ensembl ID ENSCCRG00015036187 Gene ID Accession -
Symbol Alias - Full Name 5'-3' exoribonuclease 1
Status Confidence Length 19618 bases Strand Minus strand
Position SAUI01065439.1 : 1128526 - 1148143 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00015095255 SH3_12 PF18129 3.4e-18 1
ENSCCRP00015095255 XRN_N PF03159 5.4e-94 2
ENSCCRP00015095255 XRN1_D1 PF18332 1.1e-25 3
ENSCCRP00015095247 SH3_12 PF18129 3.5e-18 1
ENSCCRP00015095247 XRN_N PF03159 6.2e-94 2
ENSCCRP00015095247 XRN1_D1 PF18332 3.9e-25 3
ENSCCRP00015095192 SH3_12 PF18129 3.7e-18 1
ENSCCRP00015095192 XRN_N PF03159 5.9e-94 2
ENSCCRP00015095192 XRN1_D1 PF18332 1.2e-25 3
ENSCCRP00015095193 SH3_12 PF18129 3.9e-18 1
ENSCCRP00015095193 XRN_N PF03159 6.1e-94 2
ENSCCRP00015095193 XRN1_D1 PF18332 1.2e-25 3
ENSCCRP00015094545 SH3_12 PF18129 4.1e-18 1
ENSCCRP00015094545 XRN_N PF03159 6.4e-94 2
ENSCCRP00015094545 XRN1_D1 PF18332 1.7e-26 3
ENSCCRP00015094528 SH3_12 PF18129 4.2e-18 1
ENSCCRP00015094528 XRN_N PF03159 6.1e-94 2
ENSCCRP00015094528 XRN1_D1 PF18332 1.4e-30 3
ENSCCRP00015095276 SH3_12 PF18129 4.1e-07 1
ENSCCRP00015095276 XRN_N PF03159 4e-94 2
ENSCCRP00015095276 XRN1_D1 PF18332 8e-26 3
ENSCCRP00015095295 XRN_N PF03159 3.3e-94 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00015097594 5052 1683aa ENSCCRP00015094528
- ENSCCRT00015097612 4935 1644aa ENSCCRP00015094545
- ENSCCRT00015098277 4332 1443aa ENSCCRP00015095192
- ENSCCRT00015098278 4434 1477aa ENSCCRP00015095193
- ENSCCRT00015098332 4431 1476aa ENSCCRP00015095247
- ENSCCRT00015098340 4137 1378aa ENSCCRP00015095255
- ENSCCRT00015098361 3468 1155aa ENSCCRP00015095276
- ENSCCRT00015098380 2886 961aa ENSCCRP00015095295

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00015036187

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00015036187

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression