Description

Ensembl ID ENSCCRG00010050837 Gene ID Accession -
Symbol Alias - Full Name 5'-3' exoribonuclease 1
Status Confidence Length 21993 bases Strand Plus strand
Position SAUK01000107.1 : 4628206 - 4650198 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00010117546 SH3_12 PF18129 3.3e-18 1
ENSCCRP00010117546 XRN_N PF03159 6.2e-94 2
ENSCCRP00010117546 XRN1_D1 PF18332 3.8e-30 3
ENSCCRP00010117508 SH3_12 PF18129 3.8e-18 1
ENSCCRP00010117508 XRN_N PF03159 5.7e-94 2
ENSCCRP00010117508 XRN1_D1 PF18332 2.1e-27 3
ENSCCRP00010117525 SH3_12 PF18129 3.8e-18 1
ENSCCRP00010117525 XRN_N PF03159 6e-94 2
ENSCCRP00010117525 XRN1_D1 PF18332 2.2e-27 3
ENSCCRP00010117480 SH3_12 PF18129 4e-18 1
ENSCCRP00010117480 XRN_N PF03159 6.6e-94 2
ENSCCRP00010117480 XRN1_D1 PF18332 1.7e-26 3
ENSCCRP00010117477 SH3_12 PF18129 4.2e-18 1
ENSCCRP00010117477 XRN_N PF03159 6.2e-94 2
ENSCCRP00010117477 XRN1_D1 PF18332 1.4e-30 3
ENSCCRP00010117560 XRN_N PF03159 3.1e-94 1
ENSCCRP00010117588 XRN1_D1 PF18332 1.1e-26 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00010130518 6176 1683aa ENSCCRP00010117477
- ENSCCRT00010130522 6056 1643aa ENSCCRP00010117480
- ENSCCRT00010130565 4341 1446aa ENSCCRP00010117508
- ENSCCRT00010130582 4422 1473aa ENSCCRP00010117525
- ENSCCRT00010130603 4446 1481aa ENSCCRP00010117546
- ENSCCRT00010130617 2904 967aa ENSCCRP00010117560
- ENSCCRT00010130647 1341 446aa ENSCCRP00010117588

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010050837

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010050837

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression