Description

Ensembl ID ENSCCRG00010042532 Gene ID Accession -
Symbol Alias - Full Name SMG7 nonsense mediated mRNA decay factor
Status Confidence Length 18349 bases Strand Minus strand
Position SAUK01000640.1 : 162547 - 180895 RNA binding domain EST1 , EST1_DNA_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00010102338 EST1 PF10374 8.2e-20 1
ENSCCRP00010102338 EST1_DNA_bind PF10373 3.8e-48 2
ENSCCRP00010102242 EST1 PF10374 8.2e-20 1
ENSCCRP00010102242 EST1_DNA_bind PF10373 1.6e-41 2
ENSCCRP00010102208 EST1 PF10374 8.2e-20 1
ENSCCRP00010102208 EST1_DNA_bind PF10373 1.6e-41 2
ENSCCRP00010102247 EST1 PF10374 8.3e-20 1
ENSCCRP00010102247 EST1_DNA_bind PF10373 3.8e-48 2
ENSCCRP00010102315 EST1 PF10374 8.3e-20 1
ENSCCRP00010102315 EST1_DNA_bind PF10373 3.8e-48 2
ENSCCRP00010101970 EST1 PF10374 8.6e-20 1
ENSCCRP00010101970 EST1_DNA_bind PF10373 4e-48 2
ENSCCRP00010101986 EST1 PF10374 8.8e-20 1
ENSCCRP00010101986 EST1_DNA_bind PF10373 4.1e-48 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00010113265 4454 1150aa ENSCCRP00010101970
- ENSCCRT00010113282 4432 1167aa ENSCCRP00010101986
- ENSCCRT00010113537 4412 1112aa ENSCCRP00010102208
- ENSCCRT00010113573 4406 1110aa ENSCCRP00010102242
- ENSCCRT00010113578 4282 1117aa ENSCCRP00010102247
- ENSCCRT00010113659 3993 1119aa ENSCCRP00010102315
- ENSCCRT00010113684 3951 1105aa ENSCCRP00010102338

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010042532

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010042532

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression