Description

Ensembl ID ENSCCRG00010028286 Gene ID Accession -
Symbol Alias - Full Name SMG5 nonsense mediated mRNA decay factor
Status Confidence Length 15789 bases Strand Minus strand
Position SAUK01000161.1 : 3356035 - 3371823 RNA binding domain EST1 , PIN_4 , EST1_DNA_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00010068115 EST1 PF10374 4.1e-21 1
ENSCCRP00010068115 PIN_4 PF13638 1.9e-05 2
ENSCCRP00010068115 EST1_DNA_bind PF10373 3.2e-35 3
ENSCCRP00010068048 EST1 PF10374 4.1e-21 1
ENSCCRP00010068048 PIN_4 PF13638 4.4e-06 2
ENSCCRP00010068048 EST1_DNA_bind PF10373 2.6e-40 3
ENSCCRP00010068038 EST1 PF10374 4.2e-21 1
ENSCCRP00010068038 PIN_4 PF13638 3.6e-06 2
ENSCCRP00010068038 EST1_DNA_bind PF10373 7.5e-37 3
ENSCCRP00010068027 EST1 PF10374 4.2e-21 1
ENSCCRP00010068027 PIN_4 PF13638 3.6e-06 2
ENSCCRP00010068027 EST1_DNA_bind PF10373 3e-30 3
ENSCCRP00010067938 EST1 PF10374 4.5e-21 1
ENSCCRP00010067938 PIN_4 PF13638 1.1e-05 2
ENSCCRP00010067938 EST1_DNA_bind PF10373 2.7e-40 3
ENSCCRP00010067934 EST1 PF10374 4.8e-21 1
ENSCCRP00010067934 PIN_4 PF13638 1e-05 2
ENSCCRP00010067934 EST1_DNA_bind PF10373 8.2e-31 3
ENSCCRP00010067922 EST1 PF10374 4.8e-21 1
ENSCCRP00010067922 PIN_4 PF13638 1e-05 2
ENSCCRP00010067922 EST1_DNA_bind PF10373 3.1e-40 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00010075024 4312 1100aa ENSCCRP00010067922
- ENSCCRT00010075036 4288 1092aa ENSCCRP00010067934
- ENSCCRT00010075040 4153 1047aa ENSCCRP00010067938
- ENSCCRT00010075154 3009 1002aa ENSCCRP00010068027
- ENSCCRT00010075165 2988 995aa ENSCCRP00010068038
- ENSCCRT00010075175 2958 985aa ENSCCRP00010068048
- ENSCCRT00010075262 2916 971aa ENSCCRP00010068115

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010028286

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010028286

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression