Description

Ensembl ID ENSCCRG00010021193 Gene ID Accession -
Symbol Alias - Full Name SMG5 nonsense mediated mRNA decay factor
Status Confidence Length 19259 bases Strand Plus strand
Position SAUK01000506.1 : 293495 - 312753 RNA binding domain EST1 , PIN_4 , EST1_DNA_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00010051120 EST1 PF10374 4e-21 1
ENSCCRP00010051120 PIN_4 PF13638 3.1e-06 2
ENSCCRP00010051120 EST1_DNA_bind PF10373 1.5e-40 3
ENSCCRP00010051113 EST1 PF10374 4e-21 1
ENSCCRP00010051113 PIN_4 PF13638 3.1e-06 2
ENSCCRP00010051113 EST1_DNA_bind PF10373 1.5e-40 3
ENSCCRP00010051087 EST1 PF10374 4e-21 1
ENSCCRP00010051087 PIN_4 PF13638 3e-06 2
ENSCCRP00010051087 EST1_DNA_bind PF10373 4.9e-40 3
ENSCCRP00010050985 EST1 PF10374 4.1e-21 1
ENSCCRP00010050985 PIN_4 PF13638 2.5e-06 2
ENSCCRP00010050985 EST1_DNA_bind PF10373 6e-40 3
ENSCCRP00010050919 EST1 PF10374 4.8e-21 1
ENSCCRP00010050919 PIN_4 PF13638 3.4e-06 2
ENSCCRP00010050919 EST1_DNA_bind PF10373 4.6e-40 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00010055798 3576 1096aa ENSCCRP00010050919
- ENSCCRT00010055869 2952 983aa ENSCCRP00010050985
- ENSCCRT00010055985 2895 964aa ENSCCRP00010051087
- ENSCCRT00010056011 2892 963aa ENSCCRP00010051113
- ENSCCRT00010056019 2889 962aa ENSCCRP00010051120

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010021193

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010021193

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression