Description

Ensembl ID ENSCCRG00010018403 Gene ID Accession -
Symbol Alias - Full Name SMG6 nonsense mediated mRNA decay factor
Status Confidence Length 19723 bases Strand Plus strand
Position SAUK01000142.1 : 5319986 - 5339708 RNA binding domain EST1 , PIN_4 , EST1_DNA_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00010043341 EST1 PF10374 4.5e-14 1
ENSCCRP00010043341 EST1_DNA_bind PF10373 5.5e-59 2
ENSCCRP00010043337 EST1 PF10374 5.2e-14 1
ENSCCRP00010043337 EST1_DNA_bind PF10373 4.8e-58 2
ENSCCRP00010043298 EST1 PF10374 5.8e-14 1
ENSCCRP00010043298 PIN_4 PF13638 1.5e-08 2
ENSCCRP00010043298 EST1_DNA_bind PF10373 5.6e-58 3
ENSCCRP00010043330 EST1 PF10374 5.9e-14 1
ENSCCRP00010043330 PIN_4 PF13638 1.1e-08 2
ENSCCRP00010043330 EST1_DNA_bind PF10373 1.1e-50 3
ENSCCRP00010043330 EST1_DNA_bind PF10373 1.1e-50 4
ENSCCRP00010043299 EST1 PF10374 6e-14 1
ENSCCRP00010043299 PIN_4 PF13638 2.9e-12 2
ENSCCRP00010043299 EST1_DNA_bind PF10373 5.7e-58 3
ENSCCRP00010043304 EST1 PF10374 6.2e-14 1
ENSCCRP00010043304 PIN_4 PF13638 1.2e-08 2
ENSCCRP00010043304 EST1_DNA_bind PF10373 5.9e-58 3
ENSCCRP00010043316 EST1 PF10374 6.2e-14 1
ENSCCRP00010043316 PIN_4 PF13638 1.2e-08 2
ENSCCRP00010043316 EST1_DNA_bind PF10373 5.9e-58 3
ENSCCRP00010043324 EST1 PF10374 6.2e-14 1
ENSCCRP00010043324 PIN_4 PF13638 1.2e-08 2
ENSCCRP00010043324 EST1_DNA_bind PF10373 5.9e-58 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00010047465 4853 1515aa ENSCCRP00010043298
- ENSCCRT00010047466 4921 1536aa ENSCCRP00010043299
- ENSCCRT00010047471 5036 1576aa ENSCCRP00010043304
- ENSCCRT00010047483 5036 1576aa ENSCCRP00010043316
- ENSCCRT00010047491 5036 1576aa ENSCCRP00010043324
- ENSCCRT00010047501 4919 1537aa ENSCCRP00010043330
- ENSCCRT00010047508 4625 1410aa ENSCCRP00010043337
- ENSCCRT00010047512 3876 1291aa ENSCCRP00010043341

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010018403

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010018403

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression