Description

Ensembl ID ENSCCRG00010016092 Gene ID Accession -
Symbol Alias - Full Name SMG7 nonsense mediated mRNA decay factor
Status Confidence Length 16738 bases Strand Minus strand
Position SAUK01000306.1 : 406386 - 423123 RNA binding domain EST1 , EST1_DNA_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00010041392 EST1 PF10374 7.7e-20 1
ENSCCRP00010041392 EST1_DNA_bind PF10373 1.8e-43 2
ENSCCRP00010041128 EST1 PF10374 8.1e-20 1
ENSCCRP00010041128 EST1_DNA_bind PF10373 5.8e-41 2
ENSCCRP00010041279 EST1 PF10374 8.2e-20 1
ENSCCRP00010041279 EST1_DNA_bind PF10373 1.1e-40 2
ENSCCRP00010041255 EST1 PF10374 8.2e-20 1
ENSCCRP00010041255 EST1_DNA_bind PF10373 9.1e-48 2
ENSCCRP00010041130 EST1 PF10374 8.3e-20 1
ENSCCRP00010041130 EST1_DNA_bind PF10373 9.2e-48 2
ENSCCRP00010040991 EST1 PF10374 8.4e-20 1
ENSCCRP00010040991 EST1_DNA_bind PF10373 9.3e-48 2
ENSCCRP00010041124 EST1 PF10374 8.5e-20 1
ENSCCRP00010041124 EST1_DNA_bind PF10373 6e-41 2
ENSCCRP00010040963 EST1 PF10374 8.8e-20 1
ENSCCRP00010040963 EST1_DNA_bind PF10373 9.9e-48 2

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00010044973 4018 1166aa ENSCCRP00010040963
- ENSCCRT00010045007 4012 1123aa ENSCCRP00010040991
- ENSCCRT00010045147 3988 1139aa ENSCCRP00010041124
- ENSCCRT00010045152 3940 1099aa ENSCCRP00010041128
- ENSCCRT00010045154 3868 1116aa ENSCCRP00010041130
- ENSCCRT00010045291 3841 1107aa ENSCCRP00010041255
- ENSCCRT00010045316 3832 1104aa ENSCCRP00010041279
- ENSCCRT00010045435 3694 1058aa ENSCCRP00010041392

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010016092

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010016092

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression