Description

Ensembl ID ENSCCRG00010013682 Gene ID Accession -
Symbol Alias - Full Name SMG6 nonsense mediated mRNA decay factor
Status Confidence Length 31187 bases Strand Minus strand
Position SAUK01000029.1 : 4241500 - 4272686 RNA binding domain EST1 , PIN_4 , EST1_DNA_bind
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCRP00010032156 EST1 PF10374 5.4e-14 1
ENSCCRP00010032156 PIN_4 PF13638 2.7e-12 2
ENSCCRP00010032156 EST1_DNA_bind PF10373 2.2e-58 3
ENSCCRP00010032164 EST1 PF10374 5.5e-14 1
ENSCCRP00010032164 PIN_4 PF13638 2.1e-15 2
ENSCCRP00010032164 EST1_DNA_bind PF10373 2.2e-58 3
ENSCCRP00010032166 EST1 PF10374 5.7e-14 1
ENSCCRP00010032166 PIN_4 PF13638 2.5e-12 2
ENSCCRP00010032166 EST1_DNA_bind PF10373 2.2e-58 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCCRT00010035264 6907 1536aa ENSCCRP00010032156
- ENSCCRT00010035272 6861 1548aa ENSCCRP00010032164
- ENSCCRT00010035276 4697 1563aa ENSCCRP00010032166

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010013682

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCRG00010013682

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression