Description

Ensembl ID ENSCCAG00000029530 Gene ID Accession -
Symbol RPUSD3 Alias - Full Name NA
Status Confidence Length 6247 bases Strand Plus strand
Position KV389707.1 : 3031039 - 3037285 RNA binding domain PseudoU_synth_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCCAP00000023499 PseudoU_synth_2 PF00849 5.6e-20 1
ENSCCAP00000023516 PseudoU_synth_2 PF00849 1.3e-18 1
ENSCCAP00000023508 PseudoU_synth_2 PF00849 3e-15 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RPUSD3-201 ENSCCAT00000041004 1434 348aa ENSCCAP00000023499
RPUSD3-202 ENSCCAT00000041013 1002 333aa ENSCCAP00000023508
RPUSD3-203 ENSCCAT00000041021 639 212aa ENSCCAP00000023516

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCAG00000029530cebus_imitatorENSCCAP0000001313022.201813.0275cebus_imitatorENSCCAP0000002349934.770120.4023
ENSCCAG00000029530cebus_imitatorENSCCAP0000001999839.516124.1935cebus_imitatorENSCCAP0000002349942.241425.8621
ENSCCAG00000029530cebus_imitatorENSCCAP0000003270629.807719.8718cebus_imitatorENSCCAP0000002349926.724117.8161

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349960.632246.8391ornithorhynchus_anatinusENSOANP0000001913064.923150.1538
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349958.333350.2874notamacropus_eugeniiENSMEUP0000001194778.988368.0934
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349968.678254.8851sarcophilus_harrisiiENSSHAP0000001830369.075155.2023
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349945.689741.954choloepus_hoffmanniENSCHOP0000000898960.456355.5133
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349983.333375.2874dasypus_novemcinctusENSDNOP0000003132176.719669.3122
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349965.229955.4598erinaceus_europaeusENSEEUP0000000670564.124354.5198
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349978.735672.7011echinops_telfairiENSETEP0000000531177.620471.6714
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349984.770180.4598callithrix_jacchusENSCJAP0000008478574.120670.3518
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349992.241489.3678cercocebus_atysENSCATP0000002708691.45388.604
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349988.218483.6207macaca_fascicularisENSMFAP0000005502868.222264.6667
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349984.195479.5977macaca_mulattaENSMMUP0000000472282.072877.591
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349992.241489.0805macaca_nemestrinaENSMNEP0000003421191.45388.3191
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349993.103489.9425papio_anubisENSPANP0000001818892.307789.1738
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349992.528789.6552mandrillus_leucophaeusENSMLEP0000001946991.737988.8889
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349992.816189.3678gorilla_gorillaENSGGOP0000001279992.022888.604
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349992.816189.3678pan_paniscusENSPPAP0000003015792.022888.604
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349992.816189.3678pan_troglodytesENSPTRP0000007857392.022888.604
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349991.95489.0805pongo_abeliiENSPPYP0000001529091.428688.5714
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349990.804687.6437homo_sapiensENSP0000037333192.128388.9213
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349986.494378.7356canis_lupus_familiarisENSCAFP0084501224085.511477.8409
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349984.770178.1609vulpes_vulpesENSVVUP0000003277685.755879.0698
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349980.747172.7011ursus_americanusENSUAMP0000001413287.538978.8162
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349986.781679.023ailuropoda_melanoleucaENSAMEP0000001713385.795578.125
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349984.770176.7241mustela_putorius_furoENSMPUP0000001702383.806875.8523
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349986.781679.3103felis_catusENSFCAP0000001317385.795578.4091
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349987.643779.5977panthera_pardusENSPPRP0000000100686.647778.6932
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349987.93180.1724panthera_leoENSPLOP0000000637486.931879.2614
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.632278.7356tursiops_truncatusENSTTRP0000000713784.659177.8409
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349988.505781.8966delphinapterus_leucasENSDLEP0000001783687.580.9659
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349987.356380.7471balaenoptera_musculusENSBMSP0001001075886.363679.8295
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349987.356380.4598physeter_catodonENSPCTP0000501970886.609779.7721
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.919579.023loxodonta_africanaENSLAFP0000001467586.918679.9419
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349987.93180.4598equus_caballusENSECAP000000654228577.7778
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349955.747149.7126procavia_capensisENSPCAP0000001282267.12859.8616
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349983.620774.4253equus_asinusENSEASP0000504262478.861870.1897
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349986.494379.023sus_scrofaENSSSCP0000001231385.511478.125
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349988.793181.3218camelus_dromedariusENSCDRP0000501667784.657577.5342
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349983.620777.8736capra_hircusENSCHIP0000003181087.387481.3814
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349969.540260.9195ochotona_princepsENSOPRP0000000213168.945960.3989
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349986.206979.8851ovis_aries_rambouilletENSOARP0002003263885.470179.2023
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349984.770178.4483bos_taurusENSBTAP0000001047885.755879.3605
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349956.896648.8506oryctolagus_cuniculusENSOCUP0000002181845.622139.1705
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.344875marmota_marmota_marmotaENSMMMP0000001022386.337275.8721
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349965.229961.2069dipodomys_ordiiENSDORP0000002225879.094174.216
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349982.471372.4138cricetulus_griseus_chok1gshdENSCGRP0000100395479.281869.6133
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.632275.5747urocitellus_parryiiENSUPAP0001002908486.627976.4535
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349981.034572.1264mesocricetus_auratusENSMAUP0000001627981.976772.9651
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349980.459871.2644mus_caroliMGP_CAROLIEiJ_P007541781.395372.093
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349980.172471.2644mus_musculusENSMUSP0000010871581.104772.093
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349980.172471.5517mus_pahariMGP_PahariEiJ_P005161681.104772.3837
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349980.172470.977mus_spretusMGP_SPRETEiJ_P007848481.104771.8023
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349980.459870.977mus_spicilegusENSMSIP0000003196365.420657.7103
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349975.574766.954cavia_porcellusENSCPOP0000002419974.084565.6338
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349975.287466.954rattus_norvegicusENSRNOP0000005950381.87572.8125
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349967.816161.7816octodon_degusENSODEP0000002479383.098675.7042
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349976.436869.8276heterocephalus_glaber_femaleENSHGLP0000001635768.380562.4679
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349967.816154.023monodelphis_domesticaENSMODP0000000641762.599549.8674
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349987.06978.7356ursus_maritimusENSUMAP0000002584186.079577.8409
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349968.965556.8966vombatus_ursinusENSVURP0001001435370.588258.2353
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.632279.3103bos_grunniensENSBGRP0000001705784.900378.6325
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.344878.1609microcebus_murinusENSMICP0000000211386.337279.0698
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.344879.023bos_indicus_hybridENSBIXP0000502534984.615478.3476
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349979.597774.1379otolemur_garnettiiENSOGAP0000001128188.216682.1656
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349960.632256.3218aotus_nancymaaeENSANAP0000000086878.731373.1343
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349958.90849.4253chinchilla_lanigeraENSCLAP0000000455665.286654.7771
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349996.839195.4023saimiri_boliviensis_boliviensisENSSBOP0000004021796.839195.4023
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349970.689762.6437tupaia_belangeriENSTBEP0000000015185.416775.6944
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349966.09255.1724phascolarctos_cinereusENSPCIP0000002943475.163462.7451
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349986.494376.1494ictidomys_tridecemlineatusENSSTOP0000000188885.511475.2841
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349987.356380.7471monodon_monocerosENSMMNP0001501448286.363679.8295
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349987.643781.0345phocoena_sinusENSPSNP0000002447986.647780.1136
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.057578.4483catagonus_wagneriENSCWAP0000002891684.090977.5568
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.632279.3103bison_bison_bisonENSBBBP0000001089484.900378.6325
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349979.310370.6897jaculus_jaculusENSJJAP0000000856180.232671.5116
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349987.356380.7471myotis_lucifugusENSMLUP0000000560287.356380.7471
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349984.482874.4253sciurus_vulgarisENSSVLP0000503148483.760773.7892
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349993.103489.9425rhinopithecus_bietiENSRBIP0000003512692.307789.1738
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349984.770175.2874rhinolophus_ferrumequinumENSRFEP0001002001958.415851.8812
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349993.390890.2299rhinopithecus_roxellanaENSRROP0000004007783.547680.7198
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.632279.3103bos_mutusENSBMUP0000001490884.900378.6325
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349981.609271.2644microtus_ochrogasterENSMOCP0000002697082.558172.093
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.344879.023cervus_hanglu_yarkandensisENSCHYP0000002731484.37578.125
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349992.816189.3678chlorocebus_sabaeusENSCSAP0000000669992.022888.604
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349977.586275.5747nomascus_leucogenysENSNLEP0000000509989.70187.3754
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349986.494378.7356canis_lupus_dingoENSCAFP0002001058185.511477.8409
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.632279.023moschus_moschiferusENSMMSP0000003205484.659178.125
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349981.609272.1264peromyscus_maniculatus_bairdiiENSPEMP0000001875282.558172.9651
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349986.206978.7356panthera_tigris_altaicaENSPTIP0000000428887.209379.6512
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349985.919578.4483pteropus_vampyrusENSPVAP0000001047184.943277.5568
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349983.620774.1379neovison_visonENSNVIP0000001887258.787952.1212
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349989.942584.7701propithecus_coquereliENSPCOP0000001340988.920583.8068
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349983.90877.8736carlito_syrichtaENSTSYP0000003006383.90877.8736
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349987.356381.6092prolemur_simusENSPSMP0000001333486.609780.9117
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349979.597771.2644nannospalax_galiliENSNGAP0000002590482.686674.0299
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349928.160915.8046caenorhabditis_elegansZK287.7.125.32314.2119
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349935.632222.7011ciona_intestinalisENSCINP0000000776036.578223.3038
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349937.93125.5747eptatretus_burgeriENSEBUP0000002529843.137329.085
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349939.942529.023callorhinchus_miliiENSCMIP0000002857761.233544.4934
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349917.816113.2184latimeria_chalumnaeENSLACP0000000713961.386145.5446
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349961.206944.8276xenopus_tropicalisENSXETP0000005080651.573837.7724
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349951.149442.2414chrysemys_picta_belliiENSCPBP0000001159368.199256.3218
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349951.149442.8161crocodylus_porosusENSCPRP0000502437144.38937.1571
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349926.436821.8391sphenodon_punctatusENSSPUP0000002109265.714354.2857
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349962.06943.6782laticauda_laticaudataENSLLTP0000002346853.20237.4384
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349953.448339.6552notechis_scutatusENSNSUP0000000558170.188752.0755
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349958.333342.2414pseudonaja_textilisENSPTXP0000001864566.996748.5149
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349954.02340.8046gallus_gallusENSGALP0001003150760.450245.6592
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349941.379332.1839parus_majorENSPMJP0000000558460.504247.0588
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349948.850632.4713erpetoichthys_calabaricusENSECRP0000003345155.194836.6883
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349961.494348.8506anolis_carolinensisENSACAP0000000963660.968748.433
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349936.781627.0115naja_najaENSNNAP0000000184670.329751.6483
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349946.839136.4943geospiza_fortisENSGFOP0000000993461.742448.1061
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349952.873641.6667taeniopygia_guttataENSTGUP0000000900663.230249.8282
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349950.862139.3678ficedula_albicollisENSFALP0000002030061.034547.2414
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349962.93149.4253podarcis_muralisENSPMRP0000003055864.601850.7375
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349919.827610.6322hucho_huchoENSHHUP0000002184621.698111.6352
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349919.540210.9195oncorhynchus_tshawytschaENSOTSP0000503881019.710111.0145
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349930.747117.5287oncorhynchus_tshawytschaENSOTSP0000503872233.024718.8272
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349964.367847.9885salvator_merianaeENSSMRP0000002120665.497148.8304
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349934.482826.7241chelonoidis_abingdoniiENSCABP0000000770355.045942.6605
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349953.160942.5287strigops_habroptilaENSSHBP0000501203561.872949.4983
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349959.482847.7011gopherus_evgoodeiENSGEVP0000501483964.48651.7134
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349959.482842.2414leptobrachium_leishanenseENSLLEP0000004455657.340740.7202
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349954.310341.954aquila_chrysaetos_chrysaetosENSACCP0002001501962.171148.0263
ENSCCAG00000029530cebus_imitatorENSCCAP0000002349956.896646.5517terrapene_carolina_triunguisENSTMTP0000002578162.06950.7837
ENSCCAG00000029530cebus_imitatorENSCCAP000000234992520.977terrapene_carolina_triunguisENSTMTP0000002558758.389348.9933

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression