Description

Ensembl ID ENSCATG00000036939 Gene ID Accession -
Symbol RPUSD3 Alias - Full Name RNA pseudouridine synthase D3
Status Confidence Length 6638 bases Strand Minus strand
Position KQ012885.1 : 33088713 - 33095350 RNA binding domain PseudoU_synth_2
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCATP00000027086 PseudoU_synth_2 PF00849 1.9e-20 1
ENSCATP00000027088 PseudoU_synth_2 PF00849 4.2e-19 1
ENSCATP00000027087 PseudoU_synth_2 PF00849 1.2e-15 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
RPUSD3-201 ENSCATT00000051328 1367 351aa ENSCATP00000027086
RPUSD3-202 ENSCATT00000051329 1011 336aa ENSCATP00000027087
RPUSD3-203 ENSCATT00000051330 639 212aa ENSCATP00000027088

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCATG00000036939cercocebus_atysENSCATP0000004221222.385313.0275cercocebus_atysENSCATP0000002708634.757820.2279
ENSCATG00000036939cercocebus_atysENSCATP0000003771340.583623.8727cercocebus_atysENSCATP0000002708643.589725.641
ENSCATG00000036939cercocebus_atysENSCATP0000004077030.769219.2308cercocebus_atysENSCATP0000002708627.350417.094

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCATG00000036939cercocebus_atysENSCATP0000002708660.11447.0085ornithorhynchus_anatinusENSOANP0000001913064.923150.7692
ENSCATG00000036939cercocebus_atysENSCATP0000002708668.091254.416sarcophilus_harrisiiENSSHAP0000001830369.075155.2023
ENSCATG00000036939cercocebus_atysENSCATP0000002708656.980149.2878notamacropus_eugeniiENSMEUP0000001194777.82167.3152
ENSCATG00000036939cercocebus_atysENSCATP0000002708645.58442.4501choloepus_hoffmanniENSCHOP0000000898960.836556.654
ENSCATG00000036939cercocebus_atysENSCATP0000002708683.475876.3533dasypus_novemcinctusENSDNOP0000003132177.513270.8995
ENSCATG00000036939cercocebus_atysENSCATP0000002708678.347671.51echinops_telfairiENSETEP0000000531177.903771.1048
ENSCATG00000036939cercocebus_atysENSCATP0000002708666.096956.1254erinaceus_europaeusENSEEUP0000000670565.536755.6497
ENSCATG00000036939cercocebus_atysENSCATP0000002708680.341975.7835callithrix_jacchusENSCJAP0000008478570.854366.8342
ENSCATG00000036939cercocebus_atysENSCATP0000002708642.73537.037callithrix_jacchusENSCJAP0000008463363.291154.8523
ENSCATG00000036939cercocebus_atysENSCATP0000002708699.145398.8604mandrillus_leucophaeusENSMLEP0000001946999.145398.8604
ENSCATG00000036939cercocebus_atysENSCATP0000002708698.860498.2906macaca_nemestrinaENSMNEP0000003421198.860498.2906
ENSCATG00000036939cercocebus_atysENSCATP0000002708692.877590.8832homo_sapiensENSP0000037333195.043793.0029
ENSCATG00000036939cercocebus_atysENSCATP0000002708694.017192.3077pongo_abeliiENSPPYP0000001529094.285792.5714
ENSCATG00000036939cercocebus_atysENSCATP0000002708686.039980.6268panthera_pardusENSPPRP0000000100685.795580.3977
ENSCATG00000036939cercocebus_atysENSCATP0000002708693.447391.453pan_paniscusENSPPAP0000003015793.447391.453
ENSCATG00000036939cercocebus_atysENSCATP0000002708687.179585.1852macaca_mulattaENSMMUP0000000472285.714383.7535
ENSCATG00000036939cercocebus_atysENSCATP0000002708685.470180.3419felis_catusENSFCAP0000001317385.227380.1136
ENSCATG00000036939cercocebus_atysENSCATP0000002708688.319183.4758delphinapterus_leucasENSDLEP0000001783688.068283.2386
ENSCATG00000036939cercocebus_atysENSCATP0000002708684.615476.0684marmota_marmota_marmotaENSMMMP0000001022386.337277.6163
ENSCATG00000036939cercocebus_atysENSCATP0000002708656.125449.8576procavia_capensisENSPCAP0000001282268.166160.5536
ENSCATG00000036939cercocebus_atysENSCATP0000002708685.185277.208urocitellus_parryiiENSUPAP0001002908486.918678.7791
ENSCATG00000036939cercocebus_atysENSCATP0000002708688.60483.1909camelus_dromedariusENSCDRP0000501667785.205580
ENSCATG00000036939cercocebus_atysENSCATP0000002708686.609781.4815panthera_leoENSPLOP0000000637486.363681.25
ENSCATG00000036939cercocebus_atysENSCATP0000002708691.168189.1738macaca_fascicularisENSMFAP0000005502871.111169.5556
ENSCATG00000036939cercocebus_atysENSCATP0000002708685.185279.2023loxodonta_africanaENSLAFP0000001467586.918680.814
ENSCATG00000036939cercocebus_atysENSCATP0000002708680.911772.9345mesocricetus_auratusENSMAUP0000001627982.558174.4186
ENSCATG00000036939cercocebus_atysENSCATP0000002708684.900379.2023vulpes_vulpesENSVVUP0000003277686.627980.814
ENSCATG00000036939cercocebus_atysENSCATP0000002708688.034281.1966sus_scrofaENSSSCP0000001231387.784180.9659
ENSCATG00000036939cercocebus_atysENSCATP0000002708678.917471.2251mus_spicilegusENSMSIP0000003196364.719658.4112
ENSCATG00000036939cercocebus_atysENSCATP0000002708684.615480.057bos_taurusENSBTAP0000001047886.337281.686
ENSCATG00000036939cercocebus_atysENSCATP0000002708693.732291.7379pan_troglodytesENSPTRP0000007857393.732291.7379
ENSCATG00000036939cercocebus_atysENSCATP0000002708694.871892.8775gorilla_gorillaENSGGOP0000001279994.871892.8775
ENSCATG00000036939cercocebus_atysENSCATP0000002708678.632571.51mus_musculusENSMUSP0000010871580.232672.9651
ENSCATG00000036939cercocebus_atysENSCATP0000002708668.66162.963octodon_degusENSODEP0000002479384.859277.8169
ENSCATG00000036939cercocebus_atysENSCATP0000002708678.632571.2251mus_spretusMGP_SPRETEiJ_P007848480.232672.6744
ENSCATG00000036939cercocebus_atysENSCATP0000002708686.039982.0513ovis_aries_rambouilletENSOARP0002003263886.039982.0513
ENSCATG00000036939cercocebus_atysENSCATP0000002708679.202374.9288otolemur_garnettiiENSOGAP0000001128188.53583.758
ENSCATG00000036939cercocebus_atysENSCATP0000002708684.045676.0684equus_asinusENSEASP0000504262479.945872.3577
ENSCATG00000036939cercocebus_atysENSCATP0000002708658.689550.1424chinchilla_lanigeraENSCLAP0000000455665.605156.051
ENSCATG00000036939cercocebus_atysENSCATP0000002708666.666762.6781dipodomys_ordiiENSDORP0000002225881.533176.6551
ENSCATG00000036939cercocebus_atysENSCATP0000002708688.319182.6211equus_caballusENSECAP0000006542286.111180.5556
ENSCATG00000036939cercocebus_atysENSCATP0000002708668.66161.2536ochotona_princepsENSOPRP0000000213168.66161.2536
ENSCATG00000036939cercocebus_atysENSCATP0000002708686.324881.1966tursiops_truncatusENSTTRP0000000713786.079580.9659
ENSCATG00000036939cercocebus_atysENSCATP0000002708664.387553.8462phascolarctos_cinereusENSPCIP0000002943473.856261.7647
ENSCATG00000036939cercocebus_atysENSCATP0000002708684.615477.4929mustela_putorius_furoENSMPUP0000001702384.37577.2727
ENSCATG00000036939cercocebus_atysENSCATP0000002708666.381852.7066monodelphis_domesticaENSMODP0000000641761.803749.0716
ENSCATG00000036939cercocebus_atysENSCATP0000002708686.894679.4872ursus_maritimusENSUMAP0000002584186.647779.2614
ENSCATG00000036939cercocebus_atysENSCATP0000002708696.581296.0114rhinopithecus_bietiENSRBIP0000003512696.581296.0114
ENSCATG00000036939cercocebus_atysENSCATP0000002708691.737988.604saimiri_boliviensis_boliviensisENSSBOP0000004021792.528789.3678
ENSCATG00000036939cercocebus_atysENSCATP0000002708679.487278.0627nomascus_leucogenysENSNLEP0000000509992.69191.0299
ENSCATG00000036939cercocebus_atysENSCATP0000002708675.783567.5214cavia_porcellusENSCPOP0000002419974.929666.7606
ENSCATG00000036939cercocebus_atysENSCATP0000002708687.179578.6325ictidomys_tridecemlineatusENSSTOP0000000188886.931878.4091
ENSCATG00000036939cercocebus_atysENSCATP0000002708699.145398.8604papio_anubisENSPANP0000001818899.145398.8604
ENSCATG00000036939cercocebus_atysENSCATP0000002708668.945956.9801vombatus_ursinusENSVURP0001001435371.176558.8235
ENSCATG00000036939cercocebus_atysENSCATP0000002708678.917471.2251mus_caroliMGP_CAROLIEiJ_P007541780.523372.6744
ENSCATG00000036939cercocebus_atysENSCATP0000002708657.834849.2878oryctolagus_cuniculusENSOCUP0000002181846.774239.8618
ENSCATG00000036939cercocebus_atysENSCATP0000002708684.900379.7721panthera_tigris_altaicaENSPTIP0000000428886.627981.3953
ENSCATG00000036939cercocebus_atysENSCATP0000002708684.615476.9231rhinolophus_ferrumequinumENSRFEP0001002001958.811953.4653
ENSCATG00000036939cercocebus_atysENSCATP0000002708686.324879.7721canis_lupus_familiarisENSCAFP0084501224086.079579.5455
ENSCATG00000036939cercocebus_atysENSCATP0000002708685.470181.1966moschus_moschiferusENSMMSP0000003205485.227380.9659
ENSCATG00000036939cercocebus_atysENSCATP0000002708685.185280.6268bos_indicus_hybridENSBIXP0000502534985.185280.6268
ENSCATG00000036939cercocebus_atysENSCATP0000002708679.772172.0798jaculus_jaculusENSJJAP0000000856181.395373.5465
ENSCATG00000036939cercocebus_atysENSCATP0000002708683.475879.7721capra_hircusENSCHIP0000003181087.98884.0841
ENSCATG00000036939cercocebus_atysENSCATP0000002708686.894680.057ailuropoda_melanoleucaENSAMEP0000001713386.647779.8295
ENSCATG00000036939cercocebus_atysENSCATP0000002708698.005797.4359chlorocebus_sabaeusENSCSAP0000000669998.005797.4359
ENSCATG00000036939cercocebus_atysENSCATP0000002708680.626872.3647peromyscus_maniculatus_bairdiiENSPEMP0000001875282.267473.8372
ENSCATG00000036939cercocebus_atysENSCATP0000002708685.470180.9117bos_grunniensENSBGRP0000001705785.470180.9117
ENSCATG00000036939cercocebus_atysENSCATP0000002708696.866196.2963rhinopithecus_roxellanaENSRROP0000004007787.403686.8895
ENSCATG00000036939cercocebus_atysENSCATP0000002708688.034283.1909balaenoptera_musculusENSBMSP0001001075887.784182.9545
ENSCATG00000036939cercocebus_atysENSCATP0000002708686.609779.7721pteropus_vampyrusENSPVAP0000001047186.363679.5455
ENSCATG00000036939cercocebus_atysENSCATP0000002708679.772172.0798mus_pahariMGP_PahariEiJ_P005161681.395373.5465
ENSCATG00000036939cercocebus_atysENSCATP0000002708691.45388.604cebus_imitatorENSCCAP0000002349992.241489.3678
ENSCATG00000036939cercocebus_atysENSCATP0000002708685.470181.4815cervus_hanglu_yarkandensisENSCHYP0000002731485.227381.25
ENSCATG00000036939cercocebus_atysENSCATP0000002708682.90677.7778carlito_syrichtaENSTSYP0000003006383.620778.4483
ENSCATG00000036939cercocebus_atysENSCATP0000002708684.615476.9231sciurus_vulgarisENSSVLP0000503148484.615476.9231
ENSCATG00000036939cercocebus_atysENSCATP0000002708679.202372.3647nannospalax_galiliENSNGAP0000002590482.985175.8209
ENSCATG00000036939cercocebus_atysENSCATP0000002708688.034282.0513myotis_lucifugusENSMLUP0000000560288.793182.7586
ENSCATG00000036939cercocebus_atysENSCATP0000002708656.410351.2821aotus_nancymaaeENSANAP0000000086873.880667.1642
ENSCATG00000036939cercocebus_atysENSCATP0000002708648.717945.584aotus_nancymaaeENSANAP0000004166782.211576.9231
ENSCATG00000036939cercocebus_atysENSCATP0000002708656.125451.8519aotus_nancymaaeENSANAP0000000382479.116573.0924
ENSCATG00000036939cercocebus_atysENSCATP0000002708680.05771.51cricetulus_griseus_chok1gshdENSCGRP0000100395477.624369.337
ENSCATG00000036939cercocebus_atysENSCATP0000002708687.749382.906monodon_monocerosENSMMNP0001501448287.582.6705
ENSCATG00000036939cercocebus_atysENSCATP0000002708686.039979.4872microcebus_murinusENSMICP0000000211387.790781.1047
ENSCATG00000036939cercocebus_atysENSCATP0000002708685.470180.9117bos_mutusENSBMUP0000001490885.470180.9117
ENSCATG00000036939cercocebus_atysENSCATP0000002708680.05771.51microtus_ochrogasterENSMOCP0000002697081.68672.9651
ENSCATG00000036939cercocebus_atysENSCATP0000002708688.034282.906physeter_catodonENSPCTP0000501970888.034282.906
ENSCATG00000036939cercocebus_atysENSCATP0000002708685.470180.9117bison_bison_bisonENSBBBP0000001089485.470180.9117
ENSCATG00000036939cercocebus_atysENSCATP0000002708671.225164.1026tupaia_belangeriENSTBEP0000000015186.805678.125
ENSCATG00000036939cercocebus_atysENSCATP0000002708674.643967.5214rattus_norvegicusENSRNOP0000005950381.87574.0625
ENSCATG00000036939cercocebus_atysENSCATP0000002708685.75580.057catagonus_wagneriENSCWAP0000002891685.511479.8295
ENSCATG00000036939cercocebus_atysENSCATP0000002708687.179582.906prolemur_simusENSPSMP0000001333487.179582.906
ENSCATG00000036939cercocebus_atysENSCATP0000002708677.492971.51heterocephalus_glaber_femaleENSHGLP0000001635769.922964.5244
ENSCATG00000036939cercocebus_atysENSCATP0000002708689.173885.4701propithecus_coquereliENSPCOP0000001340988.920585.2273
ENSCATG00000036939cercocebus_atysENSCATP0000002708686.324879.7721canis_lupus_dingoENSCAFP0002001058186.079579.5455
ENSCATG00000036939cercocebus_atysENSCATP0000002708688.034283.1909phocoena_sinusENSPSNP0000002447987.784182.9545
ENSCATG00000036939cercocebus_atysENSCATP0000002708682.336273.7892neovison_visonENSNVIP0000001887258.383852.3232
ENSCATG00000036939cercocebus_atysENSCATP0000002708679.487272.9345ursus_americanusENSUAMP0000001413286.915979.7508
ENSCATG00000036939cercocebus_atysENSCATP0000002708629.629616.5242caenorhabditis_elegansZK287.7.126.873414.9871
ENSCATG00000036939cercocebus_atysENSCATP0000002708635.897423.9316ciona_intestinalisENSCINP0000000776037.168124.7788
ENSCATG00000036939cercocebus_atysENSCATP0000002708637.606824.7863eptatretus_burgeriENSEBUP0000002529843.137328.4314
ENSCATG00000036939cercocebus_atysENSCATP0000002708639.316228.2051callorhinchus_miliiENSCMIP0000002857760.792943.6123
ENSCATG00000036939cercocebus_atysENSCATP0000002708617.663813.3903latimeria_chalumnaeENSLACP0000000713961.386146.5347
ENSCATG00000036939cercocebus_atysENSCATP0000002708660.683843.5897xenopus_tropicalisENSXETP0000005080651.573837.046
ENSCATG00000036939cercocebus_atysENSCATP0000002708650.427341.3105chrysemys_picta_belliiENSCPBP0000001159367.816155.5556
ENSCATG00000036939cercocebus_atysENSCATP0000002708649.572740.4558crocodylus_porosusENSCPRP0000502437143.391535.4115
ENSCATG00000036939cercocebus_atysENSCATP0000002708625.925921.0826sphenodon_punctatusENSSPUP000000210926552.8571
ENSCATG00000036939cercocebus_atysENSCATP0000002708661.823443.5897laticauda_laticaudataENSLLTP0000002346853.448337.6847
ENSCATG00000036939cercocebus_atysENSCATP0000002708652.991539.0313notechis_scutatusENSNSUP0000000558170.188751.6981
ENSCATG00000036939cercocebus_atysENSCATP0000002708657.549941.5954pseudonaja_textilisENSPTXP0000001864566.666748.1848
ENSCATG00000036939cercocebus_atysENSCATP0000002708653.561339.6011gallus_gallusENSGALP0001003150760.450244.6945
ENSCATG00000036939cercocebus_atysENSCATP0000002708640.455830.4843parus_majorENSPMJP0000000558459.663944.958
ENSCATG00000036939cercocebus_atysENSCATP0000002708649.857637.6068ficedula_albicollisENSFALP0000002030060.344845.5172
ENSCATG00000036939cercocebus_atysENSCATP0000002708660.968747.5783podarcis_muralisENSPMRP0000003055863.126849.2625
ENSCATG00000036939cercocebus_atysENSCATP0000002708652.136840.1709taeniopygia_guttataENSTGUP0000000900662.886648.4536
ENSCATG00000036939cercocebus_atysENSCATP0000002708635.612527.0655chelonoidis_abingdoniiENSCABP0000000770357.339543.578
ENSCATG00000036939cercocebus_atysENSCATP0000002708647.863231.339erpetoichthys_calabaricusENSECRP0000003345154.545535.7143
ENSCATG00000036939cercocebus_atysENSCATP0000002708660.683843.0199leptobrachium_leishanenseENSLLEP0000004455659.002841.8283
ENSCATG00000036939cercocebus_atysENSCATP0000002708619.373210.8262oncorhynchus_tshawytschaENSOTSP0000503881019.710111.0145
ENSCATG00000036939cercocebus_atysENSCATP0000002708630.769217.3789oncorhynchus_tshawytschaENSOTSP0000503872233.333318.8272
ENSCATG00000036939cercocebus_atysENSCATP0000002708658.974447.8632gopherus_evgoodeiENSGEVP0000501483964.48652.3364
ENSCATG00000036939cercocebus_atysENSCATP0000002708660.398948.1481anolis_carolinensisENSACAP0000000963660.398948.1481
ENSCATG00000036939cercocebus_atysENSCATP0000002708660.968746.4387salvator_merianaeENSSMRP0000002120662.573147.6608
ENSCATG00000036939cercocebus_atysENSCATP0000002708636.182325.9259naja_najaENSNNAP0000000184669.780250
ENSCATG00000036939cercocebus_atysENSCATP0000002708657.26546.1538terrapene_carolina_triunguisENSTMTP0000002578163.009450.7837
ENSCATG00000036939cercocebus_atysENSCATP0000002708625.356121.0826terrapene_carolina_triunguisENSTMTP0000002558759.731549.6644
ENSCATG00000036939cercocebus_atysENSCATP0000002708646.438735.0427geospiza_fortisENSGFOP0000000993461.742446.5909
ENSCATG00000036939cercocebus_atysENSCATP0000002708651.851940.4558strigops_habroptilaENSSHBP0000501203560.869647.4916
ENSCATG00000036939cercocebus_atysENSCATP0000002708619.373210.5413hucho_huchoENSHHUP0000002184621.383611.6352
ENSCATG00000036939cercocebus_atysENSCATP0000002708654.131141.0256aquila_chrysaetos_chrysaetosENSACCP0002001501962.547.3684

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression