RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCARG00000052853	Gene ID	113115206	Accession	-
Symbol	mrm3a	Alias	-	Full Name	rRNA methyltransferase 3A, mitochondrial-like
Status	Confidence	Length	3138 bases	Strand	Minus strand
Position	15 : 14519542 - 14522679	RNA binding domain	SpoU_methylase
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCARP00000103373	SpoU_methylase	PF00588	1.3e-22	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
mrm3a-201	ENSCART00000115381	1275	424aa	ENSCARP00000103373

Gene Model

Click here to download ENSCARG00000052853's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCARG00000052853's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCARG00000052853	carassius_auratus	ENSCARP00000023073	50.6493	38.7446	carassius_auratus	ENSCARP00000103373	55.1887	42.217

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	44.5755	27.5943	drosophila_melanogaster	FBpp0074739	46.4373	28.7469
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	73.8208	54.717	clupea_harengus	ENSCHAP00000007860	67.3118	49.8925
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	83.2547	73.3491	danio_rerio	ENSDARP00000119941	79.684	70.2032
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	70.5189	53.066	fundulus_heteroclitus	ENSFHEP00000002513	66.2971	49.8891
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	73.3491	59.9057	astyanax_mexicanus	ENSAMXP00000030246	70.5215	57.5964
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	65.566	51.8868	gadus_morhua	ENSGMOP00000032852	60.1732	47.619
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	70.7547	54.4811	astatotilapia_calliptera	ENSACLP00000008580	65.5022	50.4367
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	69.8113	53.7736	xiphophorus_maculatus	ENSXMAP00000019155	65.7778	50.6667
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.2264	52.8302	oryzias_latipes	ENSORLP00000039093	68.018	50.4505
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	60.1415	45.9906	chrysemys_picta_bellii	ENSCPBP00000022048	53.6842	41.0526
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.934	55.6604	oreochromis_niloticus	ENSONIP00000016543	67.1806	51.9824
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	72.1698	55.1887	haplochromis_burtoni	ENSHBUP00000031380	67.2527	51.4286
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	72.4057	54.2453	oryzias_melastigma	ENSOMEP00000003317	70.5747	52.8736
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	60.8491	44.1038	catagonus_wagneri	ENSCWAP00000002777	62.9268	45.6098
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	70.7547	54.717	pundamilia_nyererei	ENSPNYP00000022263	66.9643	51.7857
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	70.0472	54.4811	pundamilia_nyererei	ENSPNYP00000001283	68.5912	53.3487
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.2264	54.717	salmo_trutta	ENSSTUP00000109906	66.2281	50.8772
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.4623	54.2453	cottoperca_gobio	ENSCGOP00000053648	65.4428	49.676
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	72.4057	54.9528	cyclopterus_lumpus	ENSCLMP00005017999	68.9888	52.3596
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	60.1415	45.7547	ornithorhynchus_anatinus	ENSOANP00000015733	59.1647	45.0116
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	72.4057	55.4245	amphiprion_ocellaris	ENSAOCP00000031744	67.1772	51.4223
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	72.1698	57.5472	scophthalmus_maximus	ENSSMAP00000011680	67.6991	53.9823
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	61.7925	45.0472	salvator_merianae	ENSSMRP00000002334	62.5298	45.5847
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	75.4717	59.6698	ictalurus_punctatus	ENSIPUP00000024817	71.2695	56.3474
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	72.4057	56.6038	dicentrarchus_labrax	ENSDLAP00005054431	65.7388	51.3919
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	93.3962	89.1509	sinocyclocheilus_grahami	ENSSGRP00000025969	88.5906	84.5638
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	60.3774	47.6415	strigops_habroptila	ENSSHBP00005015715	62.8993	49.6315
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.934	55.4245	mastacembelus_armatus	ENSMAMP00000027212	67.6275	52.1064
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	69.5755	52.5943	poecilia_latipinna	ENSPLAP00000029116	64.978	49.1189
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	68.6321	51.1792	kryptolebias_marmoratus	ENSKMAP00000025730	67.3611	50.2315
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	64.8585	50.7075	hippocampus_comes	ENSHCOP00000025464	63.9535	50
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	60.3774	46.4623	gopherus_evgoodei	ENSGEVP00005019179	60.5201	46.5721
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	70.283	53.066	acanthochromis_polyacanthus	ENSAPOP00000001241	67.5737	51.0204
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	60.6132	46.934	chelonoidis_abingdonii	ENSCABP00000030657	60.9005	47.1564
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	60.8491	46.2264	anolis_carolinensis	ENSACAP00000015695	63.5468	48.2759
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	72.4057	54.2453	oryzias_javanicus	ENSOJAP00000042436	70.5747	52.8736
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	70.0472	54.9528	sparus_aurata	ENSSAUP00010001739	65.1316	51.0965
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	72.1698	54.9528	anabas_testudineus	ENSATEP00000032343	66.8122	50.8734
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	74.5283	56.8396	seriola_lalandi_dorsalis	ENSSLDP00000013878	68.3983	52.1645
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	74.5283	56.8396	seriola_lalandi_dorsalis	ENSSLDP00000013776	68.3983	52.1645
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.2264	54.9528	myripristis_murdjan	ENSMMDP00005025823	65.0862	50.2155
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	61.0849	45.0472	bos_taurus	ENSBTAP00000025502	62.7119	46.247
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.6981	53.7736	labrus_bergylta	ENSLBEP00000028041	67.1082	50.3311
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.6981	54.717	larimichthys_crocea	ENSLCRP00005009954	68.7783	52.4887
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.934	54.9528	maylandia_zebra	ENSMZEP00005010399	67.033	51.2088
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	72.4057	55.6604	amphiprion_percula	ENSAPEP00000013213	67.1772	51.6411
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	61.3208	45.283	bos_indicus_hybrid	ENSBIXP00005009222	62.8019	46.3768
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	61.3208	45.283	bos_mutus	ENSBMUP00000012631	62.954	46.4891
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.6981	54.9528	neolamprologus_brichardi	ENSNBRP00000026368	67.4058	51.663
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	70.9906	54.2453	scleropages_formosus	ENSSFOP00015066527	62.1901	47.5207
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	59.9057	45.9906	terrapene_carolina_triunguis	ENSTMTP00000031711	59.0698	45.3488
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	70.7547	53.066	oryzias_sinensis	ENSOSIP00000038930	67.5676	50.6757
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	91.9811	87.5	cyprinus_carpio_carpio	ENSCCRP00000115315	91.1215	86.6822
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	69.8113	52.5943	cynoglossus_semilaevis	ENSCSEP00000021168	64.0693	48.2684
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	70.7547	55.1887	amphilophus_citrinellus	ENSACIP00000010103	66.8151	52.1158
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	66.2736	47.1698	erpetoichthys_calabaricus	ENSECRP00000010754	61.22	43.573
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.6981	55.4245	stegastes_partitus	ENSSPAP00000029629	65.9436	50.9761
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	63.6792	47.8774	leptobrachium_leishanense	ENSLLEP00000041273	63.8298	47.9905
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	69.5755	52.5943	poecilia_formosa	ENSPFOP00000010304	64.978	49.1189
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	71.4623	55.6604	hucho_hucho	ENSHHUP00000060496	64.0592	49.8943
ENSCARG00000052853	carassius_auratus	ENSCARP00000103373	72.1698	54.717	nothobranchius_furzeri	ENSNFUP00015005313	67.5497	51.2141

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression