RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSCARG00000024414	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	2159 bases	Strand	Plus strand
Position	28 : 21565583 - 21567741	RNA binding domain	PABP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCARP00000056468	PABP	PF00658	4.2e-29	1
ENSCARP00000056468	PABP	PF00658	4.2e-29	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCART00000059088	1054	255aa	ENSCARP00000056468

Gene Model

Click here to download ENSCARG00000024414's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCARG00000024414's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCARG00000024414	carassius_auratus	ENSCARP00000050188	92.4107	88.3929	carassius_auratus	ENSCARP00000056468	81.1765	77.6471
ENSCARG00000024414	carassius_auratus	ENSCARP00000110354	83.0357	75.8929	carassius_auratus	ENSCARP00000056468	72.9412	66.6667
ENSCARG00000024414	carassius_auratus	ENSCARP00000117987	81.6964	74.5536	carassius_auratus	ENSCARP00000056468	71.7647	65.4902

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCARG00000024414	carassius_auratus	ENSCARP00000056468	45.8824	32.1569	clupea_harengus	ENSCHAP00000057346	48.5477	34.0249
ENSCARG00000024414	carassius_auratus	ENSCARP00000056468	65.8824	52.1569	electrophorus_electricus	ENSEEEP00000007751	74.6667	59.1111
ENSCARG00000024414	carassius_auratus	ENSCARP00000056468	63.9216	52.1569	astyanax_mexicanus	ENSAMXP00000051662	72.1239	58.8496
ENSCARG00000024414	carassius_auratus	ENSCARP00000056468	58.8235	46.6667	denticeps_clupeoides	ENSDCDP00000015176	70.7547	56.1321
ENSCARG00000024414	carassius_auratus	ENSCARP00000056468	78.4314	72.549	cyprinus_carpio_carpio	ENSCCRP00000062302	88.8889	82.2222
ENSCARG00000024414	carassius_auratus	ENSCARP00000056468	50.1961	38.0392	pygocentrus_nattereri	ENSPNAP00000012877	50.5929	38.3399

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression