RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSCARG00000021674	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	1795 bases	Strand	Minus strand
Position	21 : 22561566 - 22563360	RNA binding domain	PABP
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCARP00000050188	PABP	PF00658	2.7e-38	1
ENSCARP00000050188	PABP	PF00658	2.7e-38	2
ENSCARP00000050188	PABP	PF00658	2.7e-38	3
ENSCARP00000050181	PABP	PF00658	3.8e-30	1
ENSCARP00000050181	PABP	PF00658	3.8e-30	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCART00000052407	669	222aa	ENSCARP00000050181
-	ENSCART00000052414	675	224aa	ENSCARP00000050188

Gene Model

Click here to download ENSCARG00000021674's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCARG00000021674's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCARG00000021674	carassius_auratus	ENSCARP00000056468	81.1765	77.6471	carassius_auratus	ENSCARP00000050188	92.4107	88.3929
ENSCARG00000021674	carassius_auratus	ENSCARP00000110354	82.5893	76.3393	carassius_auratus	ENSCARP00000050188	82.5893	76.3393
ENSCARG00000021674	carassius_auratus	ENSCARP00000117987	81.25	75	carassius_auratus	ENSCARP00000050188	81.25	75

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCARG00000021674	carassius_auratus	ENSCARP00000050188	52.6786	36.6071	clupea_harengus	ENSCHAP00000057346	48.9627	34.0249
ENSCARG00000021674	carassius_auratus	ENSCARP00000050188	74.5536	59.8214	electrophorus_electricus	ENSEEEP00000007751	74.2222	59.5556
ENSCARG00000021674	carassius_auratus	ENSCARP00000050188	72.3214	59.375	astyanax_mexicanus	ENSAMXP00000051662	71.6814	58.8496
ENSCARG00000021674	carassius_auratus	ENSCARP00000050188	66.9643	53.5714	denticeps_clupeoides	ENSDCDP00000015176	70.7547	56.6038
ENSCARG00000021674	carassius_auratus	ENSCARP00000050188	95.9821	91.5179	cyprinus_carpio_carpio	ENSCCRP00000062302	95.5556	91.1111
ENSCARG00000021674	carassius_auratus	ENSCARP00000050188	56.25	43.3036	pygocentrus_nattereri	ENSPNAP00000012877	49.8024	38.3399

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression