RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSCARG00000011563	Gene ID	113040107	Accession	-
Symbol	tdrd5	Alias	-	Full Name	tudor domain-containing protein 5-like
Status	Confidence	Length	9546 bases	Strand	Minus strand
Position	22 : 24264596 - 24274141	RNA binding domain	OST-HTH , TUDOR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCARP00000025880	OST-HTH	PF12872	5.1e-38	1
ENSCARP00000025880	OST-HTH	PF12872	5.1e-38	2
ENSCARP00000025880	OST-HTH	PF12872	5.1e-38	3
ENSCARP00000025880	TUDOR	PF00567	1.9e-19	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
tdrd5-201	ENSCART00000027128	3550	910aa	ENSCARP00000025880

Gene Model

Click here to download ENSCARG00000011563's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCARG00000011563's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCARG00000011563	carassius_auratus	ENSCARP00000022032	97.9978	97.1079	carassius_auratus	ENSCARP00000025880	96.8132	95.9341
ENSCARG00000011563	carassius_auratus	ENSCARP00000061282	27.9294	13.3226	carassius_auratus	ENSCARP00000025880	19.1209	9.12088
ENSCARG00000011563	carassius_auratus	ENSCARP00000069604	26.3723	13.7232	carassius_auratus	ENSCARP00000025880	24.2857	12.6374
ENSCARG00000011563	carassius_auratus	ENSCARP00000060266	27.7603	13.5647	carassius_auratus	ENSCARP00000025880	19.3407	9.45055
ENSCARG00000011563	carassius_auratus	ENSCARP00000071020	26.2905	13.4454	carassius_auratus	ENSCARP00000025880	24.0659	12.3077

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCARG00000011563	carassius_auratus	ENSCARP00000025880	22.967	12.1978	caenorhabditis_elegans	C56G2.1a.1	24.1061	12.8028
ENSCARG00000011563	carassius_auratus	ENSCARP00000025880	18.5714	9.56044	drosophila_melanogaster	FBpp0070761	27.8418	14.3328
ENSCARG00000011563	carassius_auratus	ENSCARP00000025880	20	9.78022	ciona_intestinalis	ENSCINP00000030398	28.7975	14.0823
ENSCARG00000011563	carassius_auratus	ENSCARP00000025880	82.967	73.2967	danio_rerio	ENSDARP00000122775	83.4254	73.7017
ENSCARG00000011563	carassius_auratus	ENSCARP00000025880	92.967	89.4505	sinocyclocheilus_grahami	ENSSGRP00000108635	92.865	89.3524
ENSCARG00000011563	carassius_auratus	ENSCARP00000025880	94.7253	91.3187	cyprinus_carpio_carpio	ENSCCRP00000131736	94.414	91.0186

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression