RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSCARG00000009990	Gene ID	557999	Accession	-
Symbol	tdrd5	Alias	-	Full Name	tudor domain containing 5
Status	Confidence	Length	10912 bases	Strand	Minus strand
Position	22 : 9362998 - 9373909	RNA binding domain	OST-HTH , TUDOR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCARP00000022032	OST-HTH	PF12872	4.8e-38	1
ENSCARP00000022032	OST-HTH	PF12872	4.8e-38	2
ENSCARP00000022032	OST-HTH	PF12872	4.8e-38	3
ENSCARP00000022032	TUDOR	PF00567	9.3e-16	4

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
tdrd5-201	ENSCART00000023184	4110	899aa	ENSCARP00000022032

Gene Model

Click here to download ENSCARG00000009990's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCARG00000009990's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCARG00000009990	carassius_auratus	ENSCARP00000025880	96.8132	95.9341	carassius_auratus	ENSCARP00000022032	97.9978	97.1079
ENSCARG00000009990	carassius_auratus	ENSCARP00000061282	27.7689	13.1621	carassius_auratus	ENSCARP00000022032	19.2436	9.12125
ENSCARG00000009990	carassius_auratus	ENSCARP00000069604	25.537	13.3652	carassius_auratus	ENSCARP00000022032	23.8042	12.4583
ENSCARG00000009990	carassius_auratus	ENSCARP00000060266	27.4448	13.2492	carassius_auratus	ENSCARP00000022032	19.3548	9.34372
ENSCARG00000009990	carassius_auratus	ENSCARP00000071020	25.4502	13.0852	carassius_auratus	ENSCARP00000022032	23.5818	12.1246

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCARG00000009990	carassius_auratus	ENSCARP00000022032	22.6919	12.0133	caenorhabditis_elegans	C56G2.1a.1	23.5294	12.4567
ENSCARG00000009990	carassius_auratus	ENSCARP00000022032	18.02	9.34372	drosophila_melanogaster	FBpp0070761	26.6886	13.8386
ENSCARG00000009990	carassius_auratus	ENSCARP00000022032	19.7998	9.23248	ciona_intestinalis	ENSCINP00000030398	28.1646	13.1329
ENSCARG00000009990	carassius_auratus	ENSCARP00000022032	83.5373	74.0823	danio_rerio	ENSDARP00000122775	82.9834	73.5912
ENSCARG00000009990	carassius_auratus	ENSCARP00000022032	92.5473	89.2102	sinocyclocheilus_grahami	ENSSGRP00000108635	91.3282	88.0351
ENSCARG00000009990	carassius_auratus	ENSCARP00000022032	94.4383	91.1012	cyprinus_carpio_carpio	ENSCCRP00000131736	92.9901	89.7043

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression