RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSCAPG00000009954	Gene ID		Accession	-
Symbol		Alias	-	Full Name	zinc finger CCCH-type containing 15
Status	Confidence	Length	10644 bases	Strand	Minus strand
Position	AVPZ01000334.1 : 5242921 - 5253564	RNA binding domain	zf-CCCH , zf-CCCH_2
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCAPP00000008215	zf-CCCH	PF00642	6.1e-07	1
ENSCAPP00000008215	zf-CCCH_2	PF14608	1.9e-06	2
ENSCAPP00000008215	zf-CCCH_2	PF14608	1.9e-06	3

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCAPT00000011917	1215	404aa	ENSCAPP00000008215

Gene Model

Click here to download ENSCAPG00000009954's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCAPG00000009954's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCAPG00000009954

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCAPG00000009954

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression