Description

Ensembl ID ENSCAFG00040005960 Gene ID 477100 Accession -
Symbol Alias - Full Name 5'-3' exoribonuclease 1
Status Confidence Length 98461 bases Strand Minus strand
Position 23 : 38247004 - 38345464 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCAFP00040010629 SH3_12 PF18129 4.1e-19 1
ENSCAFP00040010629 XRN_N PF03159 1.2e-93 2
ENSCAFP00040010629 XRN1_D1 PF18332 7.4e-33 3
ENSCAFP00040010580 SH3_12 PF18129 4.1e-19 1
ENSCAFP00040010580 XRN_N PF03159 1.2e-93 2
ENSCAFP00040010580 XRN1_D1 PF18332 7.4e-33 3
ENSCAFP00040010423 SH3_12 PF18129 4.2e-19 1
ENSCAFP00040010423 XRN_N PF03159 1.3e-93 2
ENSCAFP00040010423 XRN1_D1 PF18332 7.6e-33 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
XRN1-201 ENSCAFT00040012026 5237 1743aa ENSCAFP00040010423
XRN1-202 ENSCAFT00040012211 5123 1705aa ENSCAFP00040010580
XRN1-203 ENSCAFT00040012265 5087 1693aa ENSCAFP00040010629

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCAFG00040005960

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCAFG00040005960

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression