Description

Ensembl ID ENSCAFG00030004580 Gene ID Accession -
Symbol Alias - Full Name 5'-3' exoribonuclease 1
Status Confidence Length 98399 bases Strand Minus strand
Position 23 : 38411981 - 38510379 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSCAFP00030008367 SH3_12 PF18129 4.1e-19 1
ENSCAFP00030008367 XRN_N PF03159 1.2e-93 2
ENSCAFP00030008367 XRN1_D1 PF18332 7.4e-33 3
ENSCAFP00030008338 SH3_12 PF18129 4.1e-19 1
ENSCAFP00030008338 XRN_N PF03159 1.3e-93 2
ENSCAFP00030008338 XRN1_D1 PF18332 7.4e-33 3
ENSCAFP00030008199 SH3_12 PF18129 4.2e-19 1
ENSCAFP00030008199 XRN_N PF03159 1.3e-93 2
ENSCAFP00030008199 XRN1_D1 PF18332 7.7e-33 3

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSCAFT00030009360 5237 1743aa ENSCAFP00030008199
- ENSCAFT00030009536 5123 1705aa ENSCAFP00030008338
- ENSCAFT00030009573 5087 1693aa ENSCAFP00030008367

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCAFG00030004580

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSCAFG00030004580

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression