RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCAFG00020007929	Gene ID	112647455	Accession	-
Symbol	POLR2A	Alias	-	Full Name	RNA polymerase II subunit A
Status	Confidence	Length	24921 bases	Strand	Minus strand
Position	QKWQ01002225.1 : 56722785 - 56747705	RNA binding domain	RNA_pol_Rpb1_4 , RNA_pol_Rpb1_1 , RNA_pol_Rpb1_5 , RNA_pol_Rpb1_2 , RNA_pol_Rpb1_3 , RNA_pol_Rpb1_R , RNA_pol_Rpb1_6 , RNA_pol_Rpb1_7
Summary	N.A.

RNA binding domains (RBDs)

Search:

Protein	Domain	Pfam ID	E-value	Domain number
ENSCAFP00020010298	RNA_pol_Rpb1_4	PF05000	5.4e-38	1
ENSCAFP00020010298	RNA_pol_Rpb1_1	PF04997	6e-109	2
ENSCAFP00020010298	RNA_pol_Rpb1_5	PF04998	9.7e-101	3
ENSCAFP00020010298	RNA_pol_Rpb1_2	PF00623	3.1e-74	4
ENSCAFP00020010298	RNA_pol_Rpb1_3	PF04983	7.6e-42	5
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	6
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	7
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	8
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	9
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	10
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	11
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	12
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	13
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	14
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	15
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	16
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	17
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	18
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	19
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	20
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	21
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	22
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	23
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	24
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	25
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	26
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	27
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	28
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	29
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	30
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	31
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	32
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	33
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	34
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	35
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	36
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	37
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	38
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	39
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	40
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	41
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	42
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	43
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	44
ENSCAFP00020010298	RNA_pol_Rpb1_R	PF05001	2.8e-28	45
ENSCAFP00020010298	RNA_pol_Rpb1_6	PF04992	3e-68	46
ENSCAFP00020010298	RNA_pol_Rpb1_7	PF04990	8.4e-55	47
ENSCAFP00020010319	RNA_pol_Rpb1_4	PF05000	5.2e-38	1
ENSCAFP00020010319	RNA_pol_Rpb1_1	PF04997	5.2e-109	2
ENSCAFP00020010319	RNA_pol_Rpb1_5	PF04998	9.1e-101	3
ENSCAFP00020010319	RNA_pol_Rpb1_2	PF00623	2.9e-74	4
ENSCAFP00020010319	RNA_pol_Rpb1_3	PF04983	1.1e-46	5
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	6
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	7
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	8
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	9
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	10
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	11
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	12
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	13
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	14
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	15
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	16
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	17
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	18
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	19
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	20
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	21
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	22
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	23
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	24
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	25
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	26
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	27
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	28
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	29
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	30
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	31
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	32
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	33
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	34
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	35
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	36
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	37
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	38
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	39
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	40
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	41
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	42
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	43
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	44
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	45
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	46
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	47
ENSCAFP00020010319	RNA_pol_Rpb1_R	PF05001	2.5e-32	48
ENSCAFP00020010319	RNA_pol_Rpb1_6	PF04992	2.9e-68	49
ENSCAFP00020010319	RNA_pol_Rpb1_7	PF04990	8e-55	50

Showing 1 to 97 of 97 entries

Pubmed ID	Full Name	Cell	Author	Time	Doi
No data available in table

Pubmed ID	Title	Author	Time	Journal
No data available in table

Transcripts

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Search:

Name	Transcript ID	bp	Protein	Translation ID
POLR2A-201	ENSCAFT00020011958	5895	1964aa	ENSCAFP00020010298
POLR2A-202	ENSCAFT00020011985	5769	1922aa	ENSCAFP00020010319

Showing 1 to 2 of 2 entries

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Gene Model

Click here to download ENSCAFG00020007929's gene model file

ensgID	Trait	pValue	Pubmed ID
No data available in table

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID
No data available in table

Protein-Protein Interaction (PPI)

Click here to download ENSCAFG00020007929's PPI file

Paralogs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020018548	55.036	36.4029	canis_lupus_dingo	ENSCAFP00020010298	38.9511	25.7637
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020019805	38.5017	23.9837	canis_lupus_dingo	ENSCAFP00020010298	33.7576	21.0285

Showing 1 to 2 of 2 entries

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Orthologs

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Search:

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020010298	28.2077	28.1059	ornithorhynchus_anatinus	ENSOANP00000005236	99.2832	98.9247
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020010298	99.5927	99.0326	sarcophilus_harrisii	ENSSHAP00000003240	99.2893	98.731
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020010298	74.389	73.6762	notamacropus_eugenii	ENSMEUP00000007896	87.0679	86.2336
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020010298	97.1996	96.4868	dasypus_novemcinctus	ENSDNOP00000012781	98.0987	97.3792
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020010298	78.1059	77.5967	erinaceus_europaeus	ENSEEUP00000001041	93.708	93.0971
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020010298	79.6334	78.3605	echinops_telfairi	ENSETEP00000002073	82.6202	81.2995
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020010298	98.2688	97.8615	callithrix_jacchus	ENSCJAP00000028013	97.9695	97.5635
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020010298	98.2688	97.8106	cercocebus_atys	ENSCATP00000004306	97.9695	97.5127
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020010298	28.7169	28.4623	macaca_fascicularis	ENSMFAP00000010353	99.6466	98.7633
ENSCAFG00020007929	canis_lupus_dingo	ENSCAFP00020010298	98.2688	97.8106	macaca_mulatta	ENSMMUP00000060307	97.9695	97.5127

Showing 1 to 10 of 194 entries

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Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression