RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSCABG00000000953	Gene ID		Accession	-
Symbol		Alias	-	Full Name	ribosomal protein S18
Status	Confidence	Length	8766 bases	Strand	Minus strand
Position	PKMU01002156.1 : 213947 - 222712	RNA binding domain	Ribosomal_S13
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSCABP00000001138	Ribosomal_S13	PF00416	7.8e-56	1
ENSCABP00000001141	Ribosomal_S13	PF00416	7.8e-56	1
ENSCABP00000001146	Ribosomal_S13	PF00416	7.8e-56	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSCABT00000001230	559	168aa	ENSCABP00000001138
-	ENSCABT00000001233	559	168aa	ENSCABP00000001141
-	ENSCABT00000001238	569	168aa	ENSCABP00000001146

Gene Model

Click here to download ENSCABG00000000953's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSCABG00000000953's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000022763	80.5195	76.6234	chelonoidis_abingdonii	ENSCABP00000001146	36.9048	35.119

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	81.5476	68.4524	caenorhabditis_elegans	Y57G11C.16.1	88.961	74.6753
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	84.5238	69.6429	drosophila_melanogaster	FBpp0085585	93.4211	76.9737
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	82.7381	eptatretus_burgeri	ENSEBUP00000021102	66.0793	61.2335
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	90.4762	89.881	clupea_harengus	ENSCHAP00000019861	95.5975	94.9686
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	danio_rerio	ENSDARP00000133054	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	carassius_auratus	ENSCARP00000005130	99.3421	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	carassius_auratus	ENSCARP00000082982	99.3421	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.6905	ictalurus_punctatus	ENSIPUP00000006667	99.3421	98.0263
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	electrophorus_electricus	ENSEEEP00000005985	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	90.4762	88.0952	esox_lucius	ENSELUP00000019614	99.3464	96.732
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	48.8095	48.8095	oncorhynchus_kisutch	ENSOKIP00005055382	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	oncorhynchus_mykiss	ENSOMYP00000033264	98.0519	96.1039
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	oncorhynchus_mykiss	ENSOMYP00000051605	99.3421	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	salmo_salar	ENSSSAP00000112042	98.0519	96.1039
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	salmo_trutta	ENSSTUP00000073718	99.3421	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	salmo_trutta	ENSSTUP00000080216	98.0519	96.1039
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	gadus_morhua	ENSGMOP00000011502	99.3421	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	fundulus_heteroclitus	ENSFHEP00000025348	99.3421	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	poecilia_reticulata	ENSPREP00000032252	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	xiphophorus_maculatus	ENSXMAP00000026652	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	92.8571	90.4762	oryzias_latipes	ENSORLP00000001372	72.8972	71.028
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	93.4524	89.881	cyclopterus_lumpus	ENSCLMP00005016707	72.6852	69.9074
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.6905	87.5	haplochromis_burtoni	ENSHBUP00000011269	98.0263	96.7105
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.6905	87.5	astatotilapia_calliptera	ENSACLP00000016157	98.6755	97.351
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	91.6667	88.6905	sparus_aurata	ENSSAUP00010001694	86.0335	83.2402
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	48.8095	48.8095	lates_calcarifer	ENSLCAP00010044145	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	xenopus_tropicalis	ENSXETP00000088767	91.5152	89.697
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	48.8095	48.8095	sphenodon_punctatus	ENSSPUP00000022638	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	91.6667	90.4762	pseudonaja_textilis	ENSPTXP00000023543	91.1243	89.9408
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	91.6667	90.4762	pseudonaja_textilis	ENSPTXP00000023548	91.1243	89.9408
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	48.8095	48.8095	ornithorhynchus_anatinus	ENSOANP00000046955	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	70.2381	70.2381	choloepus_hoffmanni	ENSCHOP00000003310	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	89.881	sarcophilus_harrisii	ENSSHAP00000007901	73.301	73.301
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	47.619	47.619	echinops_telfairi	ENSETEP00000000142	97.561	97.561
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	79.1667	78.5714	cercocebus_atys	ENSCATP00000038226	93.007	92.3077
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.6905	86.3095	macaca_mulatta	ENSMMUP00000079114	98.0263	95.3947
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.6905	86.3095	macaca_nemestrina	ENSMNEP00000000869	98.0263	95.3947
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.6905	87.5	gorilla_gorilla	ENSGGOP00000025849	96.7533	95.4545
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	66.6667	65.4762	papio_anubis	ENSPANP00000060455	79.4326	78.0142
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	87.5	86.3095	pan_troglodytes	ENSPTRP00000077111	96.7105	95.3947
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	87.5	86.3095	pan_troglodytes	ENSPTRP00000065874	96.7105	95.3947
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	89.2857	pan_paniscus	ENSPPAP00000003890	98.6842	98.6842
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	92.2619	91.6667	pongo_abelii	ENSPPYP00000023575	66.5236	66.0944
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	90.4762	90.4762	mustela_putorius_furo	ENSMPUP00000002282	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	92.2619	91.0714	bos_taurus	ENSBTAP00000063082	92.2619	91.0714
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	89.881	capra_hircus	ENSCHIP00000030566	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	93.4524	92.8571	oryctolagus_cuniculus	ENSOCUP00000043572	50.6452	50.3226
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.6905	dipodomys_ordii	ENSDORP00000023857	98.6842	98.0263
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	75	72.0238	cricetulus_griseus_chok1gshd	ENSCGRP00001025452	88.7324	85.2113
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.6905	87.5	mesocricetus_auratus	ENSMAUP00000000357	98.0263	96.7105
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	71.4286	71.4286	mus_spretus	MGP_SPRETEiJ_P0045999	99.1736	99.1736
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	89.881	octodon_degus	ENSODEP00000023692	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	78.5714	78.5714	octodon_degus	ENSODEP00000010826	95.6522	95.6522
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	87.5	dicentrarchus_labrax	ENSDLAP00005072454	99.3421	96.7105
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	86.9048	erpetoichthys_calabaricus	ENSECRP00000028453	98.6842	96.0526
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	cyprinodon_variegatus	ENSCVAP00000008596	99.3421	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	82.1429	75.5952	anolis_carolinensis	ENSACAP00000002877	65.4028	60.1896
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	77.9762	75	bos_indicus_hybrid	ENSBIXP00005033571	71.5847	68.8525
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	90.4762	89.881	vombatus_ursinus	ENSVURP00010019700	91.5663	90.9639
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	85.119	82.7381	takifugu_rubripes	ENSTRUP00000034159	99.3056	96.5278
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	87.5	oryzias_melastigma	ENSOMEP00000028379	98.6842	96.7105
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	90.4762	90.4762	chinchilla_lanigera	ENSCLAP00000013017	99.3464	99.3464
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	kryptolebias_marmoratus	ENSKMAP00000018996	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	90.4762	90.4762	saimiri_boliviensis_boliviensis	ENSSBOP00000036500	98.7013	98.7013
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	seriola_dumerili	ENSSDUP00000016710	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	pygocentrus_nattereri	ENSPNAP00000036795	99.3421	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.6905	88.0952	ictidomys_tridecemlineatus	ENSSTOP00000002160	98.6755	98.0132
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	poecilia_formosa	ENSPFOP00000005243	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	93.4524	89.881	poecilia_latipinna	ENSPLAP00000022088	94.012	90.4192
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	90.4762	88.6905	scophthalmus_maximus	ENSSMAP00000023772	91.5663	89.759
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	48.8095	48.8095	geospiza_fortis	ENSGFOP00000015893	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.0952	86.3095	sciurus_vulgaris	ENSSVLP00005001052	97.3684	95.3947
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	cottoperca_gobio	ENSCGOP00000009882	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	90.4762	90.4762	myotis_lucifugus	ENSMLUP00000006717	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	70.2381	59.5238	ciona_savignyi	ENSCSAVP00000008974	84.8921	71.9424
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	87.5	labrus_bergylta	ENSLBEP00000029707	99.3421	96.7105
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	91.6667	89.2857	hucho_hucho	ENSHHUP00000019724	96.8553	94.3396
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	92.8571	90.4762	hucho_hucho	ENSHHUP00000000308	90.6977	88.3721
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	anabas_testudineus	ENSATEP00000044445	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	89.881	podarcis_muralis	ENSPMRP00000002072	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	amphilophus_citrinellus	ENSACIP00000008010	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	48.8095	48.8095	oncorhynchus_tshawytscha	ENSOTSP00005044748	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	acanthochromis_polyacanthus	ENSAPOP00000001587	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	amphiprion_ocellaris	ENSAOCP00000018262	97.4026	96.1039
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	92.2619	91.0714	panthera_tigris_altaica	ENSPTIP00000002481	86.1111	85
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	gasterosteus_aculeatus	ENSGACP00000012973	99.3421	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	48.2143	47.0238	sinocyclocheilus_grahami	ENSSGRP00000007261	98.7805	96.3415
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	91.0714	89.2857	sinocyclocheilus_grahami	ENSSGRP00000040999	97.4522	95.5414
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.0952	sander_lucioperca	ENSSLUP00000050591	99.3421	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	86.9048	84.5238	nothobranchius_furzeri	ENSNFUP00015030985	96.0526	93.4211
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	73.2143	60.119	saccharomyces_cerevisiae	YDR450W	84.2466	69.1781
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	73.2143	60.119	saccharomyces_cerevisiae	YML026C	84.2466	69.1781
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	oryzias_sinensis	ENSOSIP00000021257	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	94.6429	92.8571	prolemur_simus	ENSPSMP00000026673	94.6429	92.8571
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	90.4762	88.6905	larimichthys_crocea	ENSLCRP00005002888	76	74.5
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	64.2857	60.7143	oryzias_javanicus	ENSOJAP00000041319	85.0394	80.315
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	oryzias_javanicus	ENSOJAP00000028785	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	90.4762	88.0952	betta_splendens	ENSBSLP00000008832	93.8272	91.358
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	stegastes_partitus	ENSSPAP00000010044	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	86.9048	hippocampus_comes	ENSHCOP00000021666	98.6842	96.0526
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	92.2619	89.881	amphiprion_percula	ENSAPEP00000005485	86.1111	83.8889
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.6905	87.5	maylandia_zebra	ENSMZEP00005036117	98.0263	96.7105
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	89.881	nannospalax_galili	ENSNGAP00000003633	100	100
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	92.8571	91.0714	denticeps_clupeoides	ENSDCDP00000026270	87.6404	85.9551
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.881	88.6905	peromyscus_maniculatus_bairdii	ENSPEMP00000029060	99.3421	98.0263
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	92.8571	91.0714	scleropages_formosus	ENSSFOP00015028729	90.1734	88.4393
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	cynoglossus_semilaevis	ENSCSEP00000028500	97.4026	96.1039
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	93.4524	91.6667	myripristis_murdjan	ENSMMDP00005015988	90.2299	88.5057
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	89.2857	88.0952	paramormyrops_kingsleyae	ENSPKIP00000002620	98.6842	97.3684
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.6905	87.5	tetraodon_nigroviridis	ENSTNIP00000005526	98.6755	97.351
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	92.8571	91.0714	seriola_lalandi_dorsalis	ENSSLDP00000026006	68.7225	67.4009
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	79.1667	72.619	cyprinus_carpio_carpio	ENSCCRP00000174939	67.5127	61.9289
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	88.6905	87.5	pundamilia_nyererei	ENSPNYP00000030795	98.0263	96.7105
ENSCABG00000000953	chelonoidis_abingdonii	ENSCABP00000001146	91.6667	89.2857	mastacembelus_armatus	ENSMAMP00000031310	93.3333	90.9091

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression