| RBP Type |
N.A. |
| Diseases |
|
| Drug |
|
| Main interacting RNAs |
|
| Moonlighting functions |
|
| Localizations |
|
|
BulkPerturb-seq
|
|
| Ensembl ID | ENSBSLG00000003093 | Gene ID |
114844617 |
Accession |
- |
| Symbol |
U2AF1 |
Alias |
- |
Full Name |
splicing factor U2AF 35 kDa subunit-like |
| Status |
Confidence |
Length |
5338 bases |
Strand |
Minus strand |
| Position |
2 : 4857755 - 4863092 |
RNA binding domain |
zf-CCCH , RRM_1 |
| Summary |
N.A. |
RNA binding domains (RBDs)
| Protein |
Domain |
Pfam ID |
E-value |
Domain number |
| ENSBSLP00000005898 |
zf-CCCH |
PF00642 |
1.3e-13 |
1 |
| ENSBSLP00000005898 |
zf-CCCH |
PF00642 |
1.3e-13 |
2 |
| ENSBSLP00000005898 |
RRM_1 |
PF00076 |
2.8e-05 |
3 |
| ENSBSLP00000005901 |
zf-CCCH |
PF00642 |
1.5e-13 |
1 |
| ENSBSLP00000005901 |
zf-CCCH |
PF00642 |
1.5e-13 |
2 |
| ENSBSLP00000005901 |
RRM_1 |
PF00076 |
2.7e-05 |
3 |
| ENSBSLP00000005905 |
zf-CCCH |
PF00642 |
5.3e-06 |
1 |
| ENSBSLP00000005905 |
RRM_1 |
PF00076 |
3.5e-05 |
2 |
RNA binding proteomes (RBPomes)
| Pubmed ID |
Full Name |
Cell |
Author |
Time |
Doi |
Literatures on RNA binding capacity
| Pubmed ID |
Title |
Author |
Time |
Journal |
| Name |
Transcript ID |
bp |
Protein |
Translation ID |
| u2af1-201 |
ENSBSLT00000006657 |
852 |
227aa |
ENSBSLP00000005898 |
| u2af1-202 |
ENSBSLT00000006660 |
828 |
219aa |
ENSBSLP00000005901 |
| u2af1-203 |
ENSBSLT00000006664 |
942 |
257aa |
ENSBSLP00000005905 |
| Pathway ID |
Pathway Name |
Source |
| | |
| ensgID |
Trait |
pValue |
Pubmed ID |
| ensgID | SNP | Chromosome | Position |
Trait | PubmedID | Or or BEAT |
EFO ID |
|---|
Protein-Protein Interaction (PPI)
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000044314 | 63.0522 | 57.0281 | betta_splendens | ENSBSLP00000005905 | 61.0895 | 55.2529 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000003194 | 16.0744 | 10.3215 | betta_splendens | ENSBSLP00000005905 | 36.965 | 23.7354 |
| Ensembl ID |
Source |
Target |
| Species |
Protein ID |
Perc_pos |
Perc_id |
Species |
Protein ID |
Perc_pos |
Perc_id |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.428 | 64.9805 | cyclopterus_lumpus | ENSCLMP00005028420 | 68.8213 | 63.4981 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.8171 | 65.7588 | oreochromis_niloticus | ENSONIP00000064108 | 79.8246 | 74.1228 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.0389 | 65.7588 | haplochromis_burtoni | ENSHBUP00000001351 | 75.3138 | 70.7113 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.428 | 65.7588 | lates_calcarifer | ENSLCAP00010045531 | 79.0393 | 73.7991 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.5953 | 67.7043 | dicentrarchus_labrax | ENSDLAP00005025784 | 80.7018 | 76.3158 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 69.2607 | 64.5914 | dicentrarchus_labrax | ENSDLAP00005016451 | 71.4859 | 66.6667 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 56.4202 | 52.1401 | labrus_bergylta | ENSLBEP00000032195 | 78.3784 | 72.4324 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 55.2529 | 51.751 | labrus_bergylta | ENSLBEP00000000807 | 78.8889 | 73.8889 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.5953 | 65.7588 | sander_lucioperca | ENSSLUP00000021987 | 71.875 | 66.0156 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.2062 | 65.7588 | seriola_lalandi_dorsalis | ENSSLDP00000025016 | 78.8793 | 72.8448 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 54.4747 | 43.9689 | caenorhabditis_elegans | Y116A8C.35a.2 | 49.1228 | 39.6491 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 62.6459 | 53.3074 | drosophila_melanogaster | FBpp0305600 | 60.9848 | 51.8939 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 59.9222 | 53.3074 | ciona_intestinalis | ENSCINP00000008425 | 70.6422 | 62.844 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 59.144 | 52.9183 | eptatretus_burgeri | ENSEBUP00000003662 | 75.6219 | 67.6617 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 63.8132 | 56.0311 | eptatretus_burgeri | ENSEBUP00000020473 | 57.7465 | 50.7042 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 68.4825 | 63.8132 | callorhinchus_milii | ENSCMIP00000015869 | 64.9446 | 60.5166 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.9844 | 66.537 | clupea_harengus | ENSCHAP00000000197 | 63.1399 | 58.3618 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.5953 | 66.537 | danio_rerio | ENSDARP00000005582 | 73.6 | 68.4 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.5953 | 66.537 | astyanax_mexicanus | ENSAMXP00000052332 | 77.6371 | 72.1519 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 29.9611 | 29.1829 | carassius_auratus | ENSCARP00000001569 | 90.5882 | 88.2353 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 66.1479 | 61.8677 | electrophorus_electricus | ENSEEEP00000037796 | 78.7037 | 73.6111 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 57.5875 | 50.1946 | esox_lucius | ENSELUP00000019608 | 68.2028 | 59.447 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 65.7588 | 62.2568 | oncorhynchus_kisutch | ENSOKIP00005075364 | 66.2745 | 62.7451 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.0389 | 66.1479 | oncorhynchus_mykiss | ENSOMYP00000030008 | 66.1765 | 62.5 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 68.8716 | 63.035 | oncorhynchus_mykiss | ENSOMYP00000001373 | 75 | 68.6441 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.9844 | 64.5914 | salmo_salar | ENSSSAP00000060166 | 75.8197 | 68.0328 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 69.2607 | 64.2023 | xenopus_tropicalis | ENSXETP00000103858 | 73.251 | 67.9012 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.0389 | 64.2023 | crocodylus_porosus | ENSCPRP00005023645 | 51.2821 | 47.0085 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 59.9222 | 53.3074 | anas_platyrhynchos_platyrhynchos | ENSAPLP00000032654 | 50.1629 | 44.6254 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 66.9261 | 62.6459 | meleagris_gallopavo | ENSMGAP00000015451 | 72.2689 | 67.6471 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.5953 | 65.3697 | serinus_canaria | ENSSCAP00000015297 | 66.187 | 60.4317 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 72.3735 | 65.7588 | parus_major | ENSPMJP00000014137 | 39.4904 | 35.8811 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 63.4241 | 60.7004 | choloepus_hoffmanni | ENSCHOP00000010046 | 82.3232 | 78.7879 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.428 | 64.9805 | callithrix_jacchus | ENSCJAP00000081914 | 65.8182 | 60.7273 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 59.144 | 57.5875 | gorilla_gorilla | ENSGGOP00000041078 | 91.018 | 88.6228 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.8171 | 64.2023 | mandrillus_leucophaeus | ENSMLEP00000010496 | 76.7933 | 69.6203 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 69.6498 | 64.2023 | ursus_americanus | ENSUAMP00000011648 | 73.6626 | 67.9012 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 69.2607 | 63.8132 | vulpes_vulpes | ENSVVUP00000023481 | 73.8589 | 68.0498 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 53.3074 | 51.751 | mustela_putorius_furo | ENSMPUP00000009630 | 90.1316 | 87.5 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 38.9105 | 37.7432 | ailuropoda_melanoleuca | ENSAMEP00000007186 | 74.6269 | 72.3881 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 52.1401 | 45.9144 | ochotona_princeps | ENSOPRP00000012942 | 56.3025 | 49.5798 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 69.6498 | 64.5914 | dipodomys_ordii | ENSDORP00000000193 | 77.1552 | 71.5517 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.2062 | 65.3697 | cricetulus_griseus_chok1gshd | ENSCGRP00001002711 | 76.25 | 70 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.2062 | 65.3697 | rattus_norvegicus | ENSRNOP00000082509 | 76.25 | 70 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 54.8638 | 54.0856 | pelodiscus_sinensis | ENSPSIP00000007862 | 99.2958 | 97.8873 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.5953 | 67.7043 | erpetoichthys_calabaricus | ENSECRP00000005214 | 73.0159 | 69.0476 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 69.2607 | 63.4241 | anolis_carolinensis | ENSACAP00000031637 | 59.9327 | 54.8822 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 63.035 | 56.8093 | ursus_maritimus | ENSUMAP00000035500 | 65.0602 | 58.6345 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 69.6498 | 64.2023 | tupaia_belangeri | ENSTBEP00000000386 | 80.2691 | 73.991 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.428 | 64.2023 | saimiri_boliviensis_boliviensis | ENSSBOP00000021062 | 64.1844 | 58.5106 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 59.144 | 57.5875 | bison_bison_bison | ENSBBBP00000006028 | 92.6829 | 90.2439 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.0389 | 64.5914 | ictidomys_tridecemlineatus | ENSSTOP00000027329 | 74.0741 | 68.3128 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.2062 | 64.5914 | geospiza_fortis | ENSGFOP00000021891 | 65.8273 | 59.7122 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 60.3113 | 52.5292 | ciona_savignyi | ENSCSAVP00000000588 | 73.1132 | 63.6792 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 69.6498 | 64.9805 | jaculus_jaculus | ENSJJAP00000000603 | 75.5274 | 70.4641 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.9844 | 66.1479 | myotis_lucifugus | ENSMLUP00000013426 | 77.7311 | 71.4286 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.5953 | 65.3697 | ficedula_albicollis | ENSFALP00000029293 | 66.187 | 60.4317 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 69.6498 | 64.2023 | nomascus_leucogenys | ENSNLEP00000044066 | 79.5556 | 73.3333 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.5953 | 67.7043 | hucho_hucho | ENSHHUP00000090842 | 77.6371 | 73.4177 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.8171 | 66.1479 | hucho_hucho | ENSHHUP00000008953 | 77.7778 | 72.6496 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 71.9844 | 66.1479 | hucho_hucho | ENSHHUP00000084191 | 75.8197 | 69.6721 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 68.4825 | 61.4786 | oncorhynchus_tshawytscha | ENSOTSP00005059105 | 73.6402 | 66.1088 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 43.9689 | 39.2996 | panthera_tigris_altaica | ENSPTIP00000015089 | 69.7531 | 62.3457 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 68.8716 | 63.035 | cervus_hanglu_yarkandensis | ENSCHYP00000014766 | 71.6599 | 65.587 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 68.0934 | 62.2568 | coturnix_japonica | ENSCJPP00005009966 | 57.1895 | 52.2876 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 61.0895 | 54.4747 | anser_brachyrhynchus | ENSABRP00000017217 | 37.4702 | 33.4129 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.428 | 64.9805 | denticeps_clupeoides | ENSDCDP00000012064 | 58.9577 | 54.3974 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 67.7043 | 62.2568 | denticeps_clupeoides | ENSDCDP00000033130 | 77.6786 | 71.4286 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 69.6498 | 64.5914 | struthio_camelus_australis | ENSSCUP00000016491 | 80.6306 | 74.7748 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 70.428 | 63.8132 | prolemur_simus | ENSPSMP00000028107 | 75.7322 | 68.6192 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 59.144 | 57.5875 | canis_lupus_dingo | ENSCAFP00020025845 | 91.018 | 88.6228 |
| ENSBSLG00000003093 | betta_splendens | ENSBSLP00000005905 | 60.7004 | 54.0856 | canis_lupus_dingo | ENSCAFP00020014134 | 62.9032 | 56.0484 |
| Go ID |
Go term |
No. evidence |
Entries |
Species |
Category |
