Description

Ensembl ID ENSBOBG00000007700 Gene ID Accession -
Symbol Alias - Full Name 5'-3' exoribonuclease 1
Status Confidence Length 29536 bases Strand Plus strand
Position ML984119.1 : 3382791 - 3412326 RNA binding domain SH3_12 , XRN_N , XRN1_D1
Summary N.A.

RNA binding domains (RBDs)

Protein Domain Pfam ID E-value Domain number
ENSBOBP00000012173 SH3_12 PF18129 5.9e-20 1
ENSBOBP00000012173 XRN_N PF03159 1e-77 2
ENSBOBP00000012173 XRN1_D1 PF18332 7e-32 3
ENSBOBP00000012176 SH3_12 PF18129 6.2e-20 1
ENSBOBP00000012176 XRN_N PF03159 1.2e-77 2
ENSBOBP00000012176 XRN1_D1 PF18332 1.3e-31 3
ENSBOBP00000012169 SH3_12 PF18129 6.4e-20 1
ENSBOBP00000012169 XRN_N PF03159 1.2e-77 2
ENSBOBP00000012169 XRN1_D1 PF18332 6e-29 3
ENSBOBP00000012166 SH3_12 PF18129 6.6e-20 1
ENSBOBP00000012166 XRN_N PF03159 1.3e-77 2
ENSBOBP00000012166 XRN1_D1 PF18332 1.6e-31 3
ENSBOBP00000012160 SH3_12 PF18129 6.9e-20 1
ENSBOBP00000012160 XRN_N PF03159 3.7e-77 2
ENSBOBP00000012160 XRN1_D1 PF18332 1.4e-31 3
ENSBOBP00000012189 XRN_N PF03159 1.8e-77 1
ENSBOBP00000012191 XRN1_D1 PF18332 3.8e-28 1

RNA binding proteomes (RBPomes)

Pubmed ID Full Name Cell Author Time Doi

Literatures on RNA binding capacity

Pubmed ID Title Author Time Journal

Transcripts

Name Transcript ID bp Protein Translation ID
- ENSBOBT00000012453 4873 1503aa ENSBOBP00000012160
- ENSBOBT00000012459 4750 1462aa ENSBOBP00000012166
- ENSBOBT00000012462 4301 1396aa ENSBOBP00000012169
- ENSBOBT00000012466 4178 1355aa ENSBOBP00000012173
- ENSBOBT00000012469 4478 1456aa ENSBOBP00000012176
- ENSBOBT00000012482 2903 930aa ENSBOBP00000012189
- ENSBOBT00000012484 1317 438aa ENSBOBP00000012191

Gene Model

Pathways

Pathway ID Pathway Name Source

Phenotypes

ensgID Trait pValue Pubmed ID

GWAS

ensgIDSNPChromosomePosition TraitPubmedIDOr or BEAT EFO ID

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSBOBG00000007700

Orthologs

Ensembl ID Source Target
Species Protein ID Perc_pos Perc_id Species Protein ID Perc_pos Perc_id
ENSBOBG00000007700

Gene Ontology

Go ID Go term No. evidence Entries Species Category

Expression