RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSBIXG00005004657	Gene ID	113906855	Accession	-
Symbol	APOBEC4	Alias	-	Full Name	apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4
Status	Confidence	Length	1104 bases	Strand	Minus strand
Position	16 : 63970911 - 63972014	RNA binding domain	APOBEC_N
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSBIXP00005043440	APOBEC_N	PF08210	1.5e-31	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
APOBEC4-201	ENSBIXT00005039872	1104	367aa	ENSBIXP00005043440

Gene Model

Click here to download ENSBIXG00005004657's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSBIXG00005004657's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSBIXG00005004657

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	71.9346	56.1308	ornithorhynchus_anatinus	ENSOANP00000001591	71.5447	55.8266
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	76.0218	61.3079	sarcophilus_harrisii	ENSSHAP00000016218	74.5989	60.1604
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	87.7384	78.4741	choloepus_hoffmanni	ENSCHOP00000010963	87.7384	78.4741
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	87.4659	80.3815	dasypus_novemcinctus	ENSDNOP00000029194	87.2283	80.163
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	85.8311	78.2016	callithrix_jacchus	ENSCJAP00000055173	85.3659	77.7778
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	85.2861	77.1117	macaca_fascicularis	ENSMFAP00000053404	86.2259	77.9614
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	85.0136	77.6567	macaca_mulatta	ENSMMUP00000073864	85.9504	78.5124
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	85.2861	77.9292	papio_anubis	ENSPANP00000051725	86.2259	78.7879
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	88.0109	80.3815	gorilla_gorilla	ENSGGOP00000039593	87.7717	80.163
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	85.2861	76.5668	pan_paniscus	ENSPPAP00000030576	87.6751	78.7115
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	87.4659	79.564	pan_troglodytes	ENSPTRP00000082979	87.4659	79.564
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	87.7384	79.8365	pongo_abelii	ENSPPYP00000000482	87.5	79.6196
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	87.7384	80.3815	homo_sapiens	ENSP00000310622	87.7384	80.3815
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.3733	82.8338	canis_lupus_familiaris	ENSCAFP00845006712	89.3733	82.8338
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.6458	82.5613	vulpes_vulpes	ENSVVUP00000012279	89.4022	82.337
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.9183	82.5613	ursus_americanus	ENSUAMP00000005745	89.9183	82.5613
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.9183	83.1063	ailuropoda_melanoleuca	ENSAMEP00000002614	88	81.3333
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	87.7384	79.8365	mustela_putorius_furo	ENSMPUP00000011662	86.7924	78.9757
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.6458	81.7439	felis_catus	ENSFCAP00000010134	89.4022	81.5217
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	90.1907	83.1063	panthera_leo	ENSPLOP00000029330	89.9457	82.8804
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.9183	82.8338	panthera_pardus	ENSPPRP00000024510	89.6739	82.6087
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	93.188	86.1035	delphinapterus_leucas	ENSDLEP00000028943	93.188	86.1035
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	93.733	86.921	tursiops_truncatus	ENSTTRP00000014018	93.733	86.921
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	93.4605	87.4659	physeter_catodon	ENSPCTP00005003883	93.4605	87.4659
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	90.7357	83.9237	equus_asinus	ENSEASP00005009097	90.9836	84.153
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	94.8229	88.2834	balaenoptera_musculus	ENSBMSP00010000827	94.8229	88.2834
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	90.1907	83.3787	equus_caballus	ENSECAP00000017178	90.4372	83.6066
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	70.0272	60.7629	procavia_capensis	ENSPCAP00000014146	69.837	60.5978
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.6458	83.3787	sus_scrofa	ENSSSCP00000016497	89.8907	83.6066
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	88.8283	79.2915	camelus_dromedarius	ENSCDRP00005005091	89.071	79.5082
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	100	100	bos_taurus	ENSBTAP00000053895	100	100
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	95.6403	91.5531	capra_hircus	ENSCHIP00000008974	93.6	89.6
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	97.5477	93.188	ovis_aries_rambouillet	ENSOARP00020006612	96.7568	92.4324
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	79.2915	65.9401	dipodomys_ordii	ENSDORP00000006879	83.1429	69.1429
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	74.3869	61.8529	cricetulus_griseus_chok1gshd	ENSCGRP00001003704	79.3605	65.9884
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	75.2044	62.3978	mus_caroli	MGP_CAROLIEiJ_P0020369	73.7968	61.2299
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	75.4768	61.5804	mus_musculus	ENSMUSP00000069723	74.0642	60.4278
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	74.9319	62.3978	mus_pahari	MGP_PahariEiJ_P0075648	73.5294	61.2299
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	73.297	60.4905	mus_spretus	MGP_SPRETEiJ_P0021431	72.8997	60.1626
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	74.1144	61.3079	mus_spicilegus	ENSMSIP00000008472	72.7273	60.1604
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	76.0218	64.8501	rattus_norvegicus	ENSRNOP00000077092	71.9072	61.3402
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	74.9319	66.2125	octodon_degus	ENSODEP00000013208	81.1209	71.6814
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	79.8365	70.2997	heterocephalus_glaber_female	ENSHGLP00000046273	86.1765	75.8824
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	77.6567	64.0327	monodelphis_domestica	ENSMODP00000057205	77.027	63.5135
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	70.8447	58.3106	monodelphis_domestica	ENSMODP00000054595	68.9655	56.7639
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.6458	82.2888	ursus_maritimus	ENSUMAP00000022248	89.6458	82.2888
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	79.2915	65.9401	vombatus_ursinus	ENSVURP00010013421	77.1883	64.191
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	99.455	99.1826	bison_bison_bison	ENSBBBP00000026877	98.916	98.645
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	76.8392	64.3052	phascolarctos_cinereus	ENSPCIP00000004608	76.6304	64.1304
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	86.6485	79.564	otolemur_garnettii	ENSOGAP00000002791	87.6033	80.4408
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	87.4659	78.2016	tupaia_belangeri	ENSTBEP00000005559	87.7049	78.4153
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	92.6431	91.8256	bos_mutus	ENSBMUP00000028667	94.7075	93.8719
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.9183	82.5613	panthera_tigris_altaica	ENSPTIP00000002515	89.6739	82.337
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	91.5531	84.4687	catagonus_wagneri	ENSCWAP00000026714	91.8033	84.6995
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	99.7275	99.455	bos_grunniens	ENSBGRP00000021842	99.187	98.916
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	96.1853	91.8256	cervus_hanglu_yarkandensis	ENSCHYP00000032055	96.1853	91.8256
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.3733	82.8338	canis_lupus_dingo	ENSCAFP00020019534	89.3733	82.8338
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	87.7384	80.654	nomascus_leucogenys	ENSNLEP00000039833	87.5	80.4348
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	92.6431	85.2861	phocoena_sinus	ENSPSNP00000004472	92.6431	85.2861
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	79.0191	67.8474	peromyscus_maniculatus_bairdii	ENSPEMP00000021546	81.2325	69.7479
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.3733	82.2888	pteropus_vampyrus	ENSPVAP00000001038	89.3733	82.2888
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	89.3733	82.2888	rhinolophus_ferrumequinum	ENSRFEP00010032684	88.8889	81.8428
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	87.7384	79.8365	neovison_vison	ENSNVIP00000015293	87.9781	80.0546
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	86.921	80.109	prolemur_simus	ENSPSMP00000018302	87.6374	80.7692
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	96.7302	92.0981	moschus_moschiferus	ENSMMSP00000017251	96.7302	92.0981
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	93.188	86.1035	monodon_monoceros	ENSMMNP00015013288	93.188	86.1035
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	68.3924	58.5831	nannospalax_galili	ENSNGAP00000017070	79.9363	68.4713
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	86.376	76.5668	myotis_lucifugus	ENSMLUP00000002228	86.1413	76.3587
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	85.2861	77.3842	chlorocebus_sabaeus	ENSCSAP00000017753	86.2259	78.2369
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	44.4142	29.1553	petromyzon_marinus	ENSPMAP00000006785	44.5355	29.235
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	57.4932	40.8719	callorhinchus_milii	ENSCMIP00000044836	57.8082	41.0959
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	64.8501	49.0463	latimeria_chalumnae	ENSLACP00000016461	66.1111	50
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	33.7875	22.8883	lepisosteus_oculatus	ENSLOCP00000012650	47.3282	32.0611
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	47.4114	31.8801	clupea_harengus	ENSCHAP00000061511	49.0141	32.9577
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	47.139	33.2425	oncorhynchus_kisutch	ENSOKIP00005084218	49.5702	34.957
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	48.2289	33.2425	oncorhynchus_mykiss	ENSOMYP00000136735	49.5798	34.1737
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	61.3079	43.3242	xenopus_tropicalis	ENSXETP00000037927	62.1547	43.9227
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	66.7575	51.4986	chrysemys_picta_bellii	ENSCPBP00000021913	66.3957	51.2195
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	66.7575	49.8638	sphenodon_punctatus	ENSSPUP00000014119	66.2162	49.4595
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	60.7629	45.7766	laticauda_laticaudata	ENSLLTP00000001118	56.0302	42.2111
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	60.7629	46.3215	notechis_scutatus	ENSNSUP00000019868	58.8391	44.8549
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	60.4905	46.3215	pseudonaja_textilis	ENSPTXP00000004900	64.9123	49.7076
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	56.1308	43.5967	gallus_gallus	ENSGALP00010015817	60.2339	46.7836
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	46.3215	34.0599	erpetoichthys_calabaricus	ENSECRP00000032565	53.2915	39.185
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	62.1253	48.7738	anolis_carolinensis	ENSACAP00000014906	65.7061	51.585
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	58.8556	43.8692	aquila_chrysaetos_chrysaetos	ENSACCP00020009441	60.5042	45.098
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	62.1253	46.8665	naja_naja	ENSNNAP00000022351	64.5892	48.7252
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	66.485	50.1362	chelonoidis_abingdonii	ENSCABP00000004774	63.5417	47.9167
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	56.9482	43.0518	struthio_camelus_australis	ENSSCUP00000006557	63.7195	48.1707
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	60.7629	45.2316	leptobrachium_leishanense	ENSLLEP00000014802	61.2637	45.6044
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	56.1308	42.2343	coturnix_japonica	ENSCJPP00005027480	58.0282	43.662
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	64.3052	49.0463	terrapene_carolina_triunguis	ENSTMTP00000004966	63.2708	48.2574
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	64.3052	48.7738	terrapene_carolina_triunguis	ENSTMTP00000018428	63.2708	47.9893
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	56.9482	43.8692	strigops_habroptila	ENSSHBP00005017350	60.2305	46.3977
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	45.7766	32.1526	oncorhynchus_tshawytscha	ENSOTSP00005090372	49.2669	34.6041
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	60.7629	44.4142	salvator_merianae	ENSSMRP00000015947	59.9462	43.8172
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	60.7629	46.8665	podarcis_muralis	ENSPMRP00000011392	63.8968	49.2837
ENSBIXG00005004657	bos_indicus_hybrid	ENSBIXP00005043440	45.5041	32.1526	hucho_hucho	ENSHHUP00000069564	48.688	34.4023

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression