RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSBGRG00000019979	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	7154 bases	Strand	Plus strand
Position	X : 254395 - 261548	RNA binding domain	Ribosomal_L39
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSBGRP00000031734	Ribosomal_L39	PF00832	1.3e-23	1
ENSBGRP00000031781	Ribosomal_L39	PF00832	7e-23	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSBGRT00000036721	623	51aa	ENSBGRP00000031734
-	ENSBGRT00000036774	774	126aa	ENSBGRP00000031781

Gene Model

Click here to download ENSBGRG00000019979's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSBGRG00000019979's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000012333	100	98.0392	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000009413	100	100	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000026183	100	100	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000034101	100	100	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000004695	100	100	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000003694	98.0392	98.0392	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000041722	100	98.0392	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	ornithorhynchus_anatinus	ENSOANP00000038503	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	macaca_fascicularis	ENSMFAP00000031578	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	macaca_mulatta	ENSMMUP00000024182	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	balaenoptera_musculus	ENSBMSP00010003081	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	sus_scrofa	ENSSSCP00000076875	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	bos_taurus	ENSBTAP00000046223	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	oryctolagus_cuniculus	ENSOCUP00000032765	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	monodelphis_domestica	ENSMODP00000048916	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	ictidomys_tridecemlineatus	ENSSTOP00000019328	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	moschus_moschiferus	ENSMMSP00000006469	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	phocoena_sinus	ENSPSNP00000024931	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	prolemur_simus	ENSPSMP00000000028	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	carlito_syrichta	ENSTSYP00000022646	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	chinchilla_lanigera	ENSCLAP00000009929	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	cebus_imitator	ENSCCAP00000029053	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	monodon_monoceros	ENSMMNP00015010041	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	chlorocebus_sabaeus	ENSCSAP00000019248	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	aotus_nancymaae	ENSANAP00000026969	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	bos_mutus	ENSBMUP00000028993	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	rhinolophus_ferrumequinum	ENSRFEP00010014817	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	bos_indicus_hybrid	ENSBIXP00005008844	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	canis_lupus_dingo	ENSCAFP00020000407	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	catagonus_wagneri	ENSCWAP00000026090	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	bison_bison_bison	ENSBBBP00000012346	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	38.0952	34.127	ciona_intestinalis	ENSCINP00000029714	94.1176	84.3137
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	lepisosteus_oculatus	ENSLOCP00000018749	98.0392	98.0392
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	42.0635	39.6825	clupea_harengus	ENSCHAP00000045129	91.3793	86.2069
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825	danio_rerio	ENSDARP00000052760	100	98.0392
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	37.3016	36.5079	carassius_auratus	ENSCARP00000013018	92.1569	90.1961
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	37.3016	36.5079	carassius_auratus	ENSCARP00000013589	92.1569	90.1961
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	36.5079	36.5079	astyanax_mexicanus	ENSAMXP00000000203	92	92
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825	ictalurus_punctatus	ENSIPUP00000028479	100	98.0392
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	38.8889	electrophorus_electricus	ENSEEEP00000030214	94.4444	90.7407
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	oncorhynchus_kisutch	ENSOKIP00005063249	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	oncorhynchus_kisutch	ENSOKIP00005073017	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	51.5873	45.2381	salmo_salar	ENSSSAP00000004375	38.4615	33.7278
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	cyclopterus_lumpus	ENSCLMP00005009428	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	41.2698	39.6825	xiphophorus_maculatus	ENSXMAP00000013713	89.6552	86.2069
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825	oreochromis_niloticus	ENSONIP00000058926	98.0769	96.1538
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	41.2698	39.6825	haplochromis_burtoni	ENSHBUP00000031620	94.5455	90.9091
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	41.2698	39.6825	astatotilapia_calliptera	ENSACLP00000002419	94.5455	90.9091
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	sparus_aurata	ENSSAUP00010043428	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	lates_calcarifer	ENSLCAP00010031386	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	lates_calcarifer	ENSLCAP00010053876	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	38.8889	38.0952	dicentrarchus_labrax	ENSDLAP00005035820	96.0784	94.1176
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825	pygocentrus_nattereri	ENSPNAP00000015517	100	98.0392
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	37.3016	34.127	ciona_savignyi	ENSCSAVP00000006665	92.1569	84.3137
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825	neolamprologus_brichardi	ENSNBRP00000014993	98.0769	96.1538
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	41.2698	39.6825	maylandia_zebra	ENSMZEP00005010452	94.5455	90.9091
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	41.2698	40.4762	denticeps_clupeoides	ENSDCDP00000039864	98.1132	96.2264
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	myripristis_murdjan	ENSMMDP00005032979	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	35.7143	34.127	cynoglossus_semilaevis	ENSCSEP00000003107	91.8367	87.7551
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825	scophthalmus_maximus	ENSSMAP00000056361	98.0769	96.1538
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825	amphilophus_citrinellus	ENSACIP00000017488	98.0769	96.1538
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825	takifugu_rubripes	ENSTRUP00000027356	98.0769	96.1538
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	41.2698	41.2698	poecilia_formosa	ENSPFOP00000017508	85.2459	85.2459
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825	acanthochromis_polyacanthus	ENSAPOP00000010358	96.2264	94.3396
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	38.8889	38.0952	larimichthys_crocea	ENSLCRP00005047050	89.0909	87.2727
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	cottoperca_gobio	ENSCGOP00000035450	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	38.8889	38.8889	paramormyrops_kingsleyae	ENSPKIP00000000873	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	hucho_hucho	ENSHHUP00000083759	100	100
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	35.7143	35.7143	seriola_lalandi_dorsalis	ENSSLDP00000003966	97.8261	97.8261
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	36.5079	36.5079	sinocyclocheilus_grahami	ENSSGRP00000110099	90.1961	90.1961
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	38.8889	amphiprion_percula	ENSAPEP00000007653	96.1538	94.2308
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	42.0635	41.2698	oryzias_javanicus	ENSOJAP00000038131	58.2418	57.1429
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	38.0952	38.0952	cyprinus_carpio_carpio	ENSCCRP00000003015	94.1176	94.1176
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	38.8889	cyprinus_carpio_carpio	ENSCCRP00000038681	87.7193	85.9649
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	38.0952	38.0952	nothobranchius_furzeri	ENSNFUP00015000239	94.1176	94.1176
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	oryzias_sinensis	ENSOSIP00000006041	92.5926	92.5926
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	40.4762	39.6825	oryzias_melastigma	ENSOMEP00000013268	89.4737	87.7193
ENSBGRG00000019979	bos_grunniens	ENSBGRP00000031781	39.6825	39.6825	mastacembelus_armatus	ENSMAMP00000029759	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression