RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSBGRG00000016466	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	156 bases	Strand	Plus strand
Position	29 : 42198147 - 42198302	RNA binding domain	Ribosomal_L39
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSBGRP00000026183	Ribosomal_L39	PF00832	1.3e-23	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSBGRT00000030226	156	51aa	ENSBGRP00000026183

Gene Model

Click here to download ENSBGRG00000016466's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSBGRG00000016466's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000012333	100	98.0392	bos_grunniens	ENSBGRP00000026183	100	98.0392
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000009413	100	100	bos_grunniens	ENSBGRP00000026183	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000041722	100	98.0392	bos_grunniens	ENSBGRP00000026183	100	98.0392
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000003694	98.0392	98.0392	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000004695	100	100	bos_grunniens	ENSBGRP00000026183	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000034101	100	100	bos_grunniens	ENSBGRP00000026183	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000031781	40.4762	40.4762	bos_grunniens	ENSBGRP00000026183	100	100

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	ornithorhynchus_anatinus	ENSOANP00000038503	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	echinops_telfairi	ENSETEP00000004307	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	homo_sapiens	ENSP00000355315	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	94.1176	88.2353	felis_catus	ENSFCAP00000007648	94.1176	88.2353
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	96.0784	90.1961	panthera_leo	ENSPLOP00000028117	96.0784	90.1961
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	94.1176	92.1569	delphinapterus_leucas	ENSDLEP00000028328	94.1176	92.1569
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	92.1569	88.2353	physeter_catodon	ENSPCTP00005027816	92.1569	88.2353
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	oryctolagus_cuniculus	ENSOCUP00000035316	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	62.7451	62.7451	urocitellus_parryii	ENSUPAP00010001807	62.7451	62.7451
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	mus_musculus	ENSMUSP00000110886	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	96.0784	96.0784	vombatus_ursinus	ENSVURP00010007937	96.0784	96.0784
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	monodelphis_domestica	ENSMODP00000048916	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	ictidomys_tridecemlineatus	ENSSTOP00000019328	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	94.1176	92.1569	phocoena_sinus	ENSPSNP00000027252	94.1176	92.1569
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	94.1176	92.1569	monodon_monoceros	ENSMMNP00015013561	94.1176	92.1569
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	96.0784	96.0784	microtus_ochrogaster	ENSMOCP00000005978	96.0784	96.0784
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	94.1176	88.2353	panthera_tigris_altaica	ENSPTIP00000002022	94.1176	88.2353
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	94.1176	84.3137	ciona_intestinalis	ENSCINP00000029714	94.1176	84.3137
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	96.0784	latimeria_chalumnae	ENSLACP00000010071	100	96.0784
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	lepisosteus_oculatus	ENSLOCP00000018749	98.0392	98.0392
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	96.0784	clupea_harengus	ENSCHAP00000045129	86.2069	84.4828
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	98.0392	danio_rerio	ENSDARP00000052760	100	98.0392
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	92.1569	90.1961	carassius_auratus	ENSCARP00000013018	92.1569	90.1961
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	92.1569	90.1961	carassius_auratus	ENSCARP00000013589	92.1569	90.1961
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	90.1961	90.1961	astyanax_mexicanus	ENSAMXP00000000203	92	92
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	98.0392	ictalurus_punctatus	ENSIPUP00000028479	100	98.0392
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	96.0784	electrophorus_electricus	ENSEEEP00000030214	92.5926	90.7407
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	esox_lucius	ENSELUP00000021312	50	50
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	oncorhynchus_kisutch	ENSOKIP00005063249	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	oncorhynchus_kisutch	ENSOKIP00005073017	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	oncorhynchus_mykiss	ENSOMYP00000103686	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	salmo_salar	ENSSSAP00000004375	29.5858	29.5858
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	salmo_trutta	ENSSTUP00000004093	54.2553	54.2553
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	poecilia_reticulata	ENSPREP00000018097	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	oryzias_latipes	ENSORLP00000030883	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	cyclopterus_lumpus	ENSCLMP00005009428	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	xiphophorus_maculatus	ENSXMAP00000013713	86.2069	86.2069
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	98.0392	oreochromis_niloticus	ENSONIP00000058926	98.0769	96.1538
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	haplochromis_burtoni	ENSHBUP00000031620	90.9091	90.9091
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	astatotilapia_calliptera	ENSACLP00000002419	90.9091	90.9091
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	sparus_aurata	ENSSAUP00010043428	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	lates_calcarifer	ENSLCAP00010031386	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	lates_calcarifer	ENSLCAP00010053876	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	96.0784	94.1176	dicentrarchus_labrax	ENSDLAP00005035820	96.0784	94.1176
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	cyprinodon_variegatus	ENSCVAP00000003775	60.7143	60.7143
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	98.0392	pygocentrus_nattereri	ENSPNAP00000015517	100	98.0392
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	poecilia_latipinna	ENSPLAP00000003599	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	92.1569	84.3137	ciona_savignyi	ENSCSAVP00000006665	92.1569	84.3137
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	94.1176	88.2353	chelonoidis_abingdonii	ENSCABP00000023735	97.9592	91.8367
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	tetraodon_nigroviridis	ENSTNIP00000002826	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	68.6274	68.6274	pundamilia_nyererei	ENSPNYP00000012969	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	98.0392	neolamprologus_brichardi	ENSNBRP00000014993	98.0769	96.1538
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	maylandia_zebra	ENSMZEP00005010452	90.9091	90.9091
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	denticeps_clupeoides	ENSDCDP00000039864	94.3396	94.3396
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	myripristis_murdjan	ENSMMDP00005032979	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	88.2353	84.3137	cynoglossus_semilaevis	ENSCSEP00000003107	91.8367	87.7551
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	86.2745	84.3137	seriola_dumerili	ENSSDUP00000007712	57.8947	56.5789
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	98.0392	scophthalmus_maximus	ENSSMAP00000056361	98.0769	96.1538
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	98.0392	amphilophus_citrinellus	ENSACIP00000017488	98.0769	96.1538
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	98.0392	takifugu_rubripes	ENSTRUP00000027356	98.0769	96.1538
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	poecilia_formosa	ENSPFOP00000017508	81.9672	81.9672
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	acanthochromis_polyacanthus	ENSAPOP00000010358	94.3396	94.3396
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	96.0784	94.1176	larimichthys_crocea	ENSLCRP00005047050	89.0909	87.2727
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	oncorhynchus_tshawytscha	ENSOTSP00005005689	54.2553	54.2553
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	cottoperca_gobio	ENSCGOP00000035450	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	96.0784	96.0784	paramormyrops_kingsleyae	ENSPKIP00000000873	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	hucho_hucho	ENSHHUP00000083759	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	88.2353	88.2353	seriola_lalandi_dorsalis	ENSSLDP00000003966	97.8261	97.8261
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	90.1961	90.1961	sinocyclocheilus_grahami	ENSSGRP00000110099	90.1961	90.1961
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	100	100	hippocampus_comes	ENSHCOP00000013793	100	100
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	96.0784	96.0784	amphiprion_percula	ENSAPEP00000007653	94.2308	94.2308
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	oryzias_javanicus	ENSOJAP00000038131	54.9451	54.9451
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	94.1176	94.1176	cyprinus_carpio_carpio	ENSCCRP00000003015	94.1176	94.1176
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	96.0784	cyprinus_carpio_carpio	ENSCCRP00000038681	87.7193	85.9649
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	94.1176	94.1176	nothobranchius_furzeri	ENSNFUP00015000239	94.1176	94.1176
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	92.1569	88.2353	podarcis_muralis	ENSPMRP00000036505	92.1569	88.2353
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	oryzias_sinensis	ENSOSIP00000006041	92.5926	92.5926
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	oryzias_melastigma	ENSOMEP00000013268	87.7193	87.7193
ENSBGRG00000016466	bos_grunniens	ENSBGRP00000026183	98.0392	98.0392	mastacembelus_armatus	ENSMAMP00000029759	100	100

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression