RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSBGRG00000010276	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	13012 bases	Strand	Plus strand
Position	9 : 7714838 - 7727849	RNA binding domain	Urm1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSBGRP00000016349	Urm1	PF09138	2.5e-35	1
ENSBGRP00000016369	Urm1	PF09138	1.8e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSBGRT00000018910	297	98aa	ENSBGRP00000016349
-	ENSBGRT00000018931	2164	207aa	ENSBGRP00000016369

Gene Model

Click here to download ENSBGRG00000010276's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSBGRG00000010276's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSBGRG00000010276

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSBGRG00000010276	bos_grunniens	ENSBGRP00000016369	33.3333	28.9855	pan_troglodytes	ENSPTRP00000079471	56.5574	49.1803
ENSBGRG00000010276	bos_grunniens	ENSBGRP00000016369	30.4348	23.1884	bos_taurus	ENSBTAP00000057053	45.9854	35.0365
ENSBGRG00000010276	bos_grunniens	ENSBGRP00000016369	51.6908	50.7246	moschus_moschiferus	ENSMMSP00000029522	78.6765	77.2059
ENSBGRG00000010276	bos_grunniens	ENSBGRP00000016369	43.4783	42.029	bos_mutus	ENSBMUP00000008796	73.1707	70.7317

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression