RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSBBBG00000002502	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	900 bases	Strand	Minus strand
Position	KN264986.1 : 591093 - 591992	RNA binding domain	Ribosomal_S3Ae
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSBBBP00000019479	Ribosomal_S3Ae	PF01015	5.8e-25	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSBBBT00000009199	288	95aa	ENSBBBP00000019479

Gene Model

Click here to download ENSBBBG00000002502's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSBBBG00000002502's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSBBBG00000002502

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSBBBG00000002502	bison_bison_bison	ENSBBBP00000019479	87.3684	82.1053	delphinapterus_leucas	ENSDLEP00000019197	88.2979	82.9787
ENSBBBG00000002502	bison_bison_bison	ENSBBBP00000019479	97.8947	97.8947	bos_taurus	ENSBTAP00000066637	97.8947	97.8947
ENSBBBG00000002502	bison_bison_bison	ENSBBBP00000019479	95.7895	95.7895	bos_indicus_hybrid	ENSBIXP00005041518	95.7895	95.7895
ENSBBBG00000002502	bison_bison_bison	ENSBBBP00000019479	93.6842	88.4211	phascolarctos_cinereus	ENSPCIP00000025364	89.899	84.8485
ENSBBBG00000002502	bison_bison_bison	ENSBBBP00000019479	97.8947	96.8421	bos_mutus	ENSBMUP00000026283	97.8947	96.8421

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression