RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSAPOG00000021668	Gene ID	110947847	Accession	-
Symbol	mbd4	Alias	-	Full Name	methyl-CpG binding domain 4, DNA glycosylase
Status	Confidence	Length	4808 bases	Strand	Plus strand
Position	MVNR01000058.1 : 812682 - 817489	RNA binding domain	MBD
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSAPOP00000018346	MBD	PF01429	7.6e-14	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSAPOT00000027926	3304	475aa	ENSAPOP00000018346

Gene Model

Click here to download ENSAPOG00000021668's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSAPOG00000021668's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000001343	21.6165	11.8421	acanthochromis_polyacanthus	ENSAPOP00000018346	24.2105	13.2632

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	13.2632	10.7368	fundulus_heteroclitus	ENSFHEP00000021531	47.3684	38.3459
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	18.7368	17.0526	fundulus_heteroclitus	ENSFHEP00000000610	76.0684	69.2308
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	73.8947	61.0526	xiphophorus_maculatus	ENSXMAP00000033707	77.827	64.3016
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	67.7895	56.8421	oryzias_latipes	ENSORLP00000013860	73.1818	61.3636
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	34.9474	31.3684	poecilia_reticulata	ENSPREP00000014638	91.2088	81.8681
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	72	61.4737	cyclopterus_lumpus	ENSCLMP00005040588	67.3228	57.4803
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	58.7368	53.2632	oreochromis_niloticus	ENSONIP00000021712	82.0588	74.4118
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	34.7368	33.0526	haplochromis_burtoni	ENSHBUP00000020118	94.2857	89.7143
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	64	57.0526	dicentrarchus_labrax	ENSDLAP00005069638	82.8338	73.842
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	34.9474	32	cyprinodon_variegatus	ENSCVAP00000012871	89.2473	81.7204
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	66.7368	56.2105	oryzias_melastigma	ENSOMEP00000026798	68.913	58.0435
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	68.4211	57.0526	takifugu_rubripes	ENSTRUP00000025500	73.6961	61.4512
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	34.7368	33.2632	neolamprologus_brichardi	ENSNBRP00000028199	94.2857	90.2857
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	81.2632	70.9474	seriola_dumerili	ENSSDUP00000001719	83.1897	72.6293
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	73.4737	60.6316	poecilia_formosa	ENSPFOP00000014496	77.0419	63.5762
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	74.5263	64.4211	kryptolebias_marmoratus	ENSKMAP00000020190	76.4579	66.0907
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	30.5263	28	scophthalmus_maximus	ENSSMAP00000069999	87.8788	80.6061
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	76.2105	64.2105	labrus_bergylta	ENSLBEP00000007312	69.6154	58.6538
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	63.1579	52.4211	tetraodon_nigroviridis	ENSTNIP00000021088	69.2841	57.5058
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	80.4211	70.9474	anabas_testudineus	ENSATEP00000020968	72.6236	64.0684
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	34.9474	32.8421	amphilophus_citrinellus	ENSACIP00000005615	94.8571	89.1429
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	78.9474	67.7895	betta_splendens	ENSBSLP00000029663	74.8503	64.2715
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	35.5789	32	cynoglossus_semilaevis	ENSCSEP00000032885	86.2245	77.551
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	20.4211	17.4737	hippocampus_comes	ENSHCOP00000004403	85.8407	73.4513
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	34.7368	33.2632	pundamilia_nyererei	ENSPNYP00000007459	94.2857	90.2857
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	50.7368	39.1579	gasterosteus_aculeatus	ENSGACP00000002558	57.7938	44.6043
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	95.7895	91.7895	amphiprion_percula	ENSAPEP00000022632	95.9916	91.9831
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	34.7368	33.2632	maylandia_zebra	ENSMZEP00005034564	94.2857	90.2857
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	80.4211	71.5789	sander_lucioperca	ENSSLUP00000053435	82.1505	73.1183
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	69.4737	57.6842	seriola_lalandi_dorsalis	ENSSLDP00000012936	70.6638	58.6724
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	31.1579	27.5789	oryzias_javanicus	ENSOJAP00000015245	89.697	79.3939
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	36	34.3158	stegastes_partitus	ENSSPAP00000026854	97.7143	93.1429
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	36	34.3158	stegastes_partitus	ENSSPAP00000027764	97.7143	93.1429
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	68	58.7368	larimichthys_crocea	ENSLCRP00005014556	79.3612	68.5504
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	95.7895	92	amphiprion_ocellaris	ENSAOCP00000012242	95.9916	92.1941
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	67.7895	56.6316	oryzias_sinensis	ENSOSIP00000042190	73.1818	61.1364
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	80	68.8421	cottoperca_gobio	ENSCGOP00000008075	84.4444	72.6667
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	72.4211	61.8947	nothobranchius_furzeri	ENSNFUP00015047504	75.1092	64.1921
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	72.2105	62.7368	mastacembelus_armatus	ENSMAMP00000035869	72.2105	62.7368
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	34.9474	31.7895	poecilia_latipinna	ENSPLAP00000018282	90.7104	82.5137
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	34.1053	27.1579	danio_rerio	ENSDARP00000145483	84.8168	67.5393
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	34.9474	29.6842	carassius_auratus	ENSCARP00000076337	81.7734	69.4581
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	54.7368	42.5263	astyanax_mexicanus	ENSAMXP00000017775	64.0394	49.7537
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	31.1579	26.5263	electrophorus_electricus	ENSEEEP00000044419	88.6228	75.4491
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	13.8947	12.4211	electrophorus_electricus	ENSEEEP00000044417	75.8621	67.8161
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	33.0526	29.0526	ictalurus_punctatus	ENSIPUP00000035023	85.7924	75.4098
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	64.8421	51.1579	esox_lucius	ENSELUP00000038595	52.292	41.2564
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	65.2632	52.4211	oncorhynchus_kisutch	ENSOKIP00005086443	54.386	43.6842
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	65.2632	52.2105	oncorhynchus_mykiss	ENSOMYP00000072892	54.6737	43.739
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	64.6316	52.2105	salmo_salar	ENSSSAP00000013300	36.0329	29.108
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	63.7895	51.7895	salmo_trutta	ENSSTUP00000076262	49.429	40.1305
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	61.4737	48.8421	gadus_morhua	ENSGMOP00000014843	57.3674	45.5796
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	48.6316	34.1053	erpetoichthys_calabaricus	ENSECRP00000026642	47.0468	32.9939
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	53.8947	42.5263	pygocentrus_nattereri	ENSPNAP00000000962	61.3909	48.4412
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	25.6842	20	ciona_savignyi	ENSCSAVP00000001836	68.1564	53.0726
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	66.3158	53.0526	hucho_hucho	ENSHHUP00000041749	54.2169	43.3735
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	40.8421	31.5789	sinocyclocheilus_grahami	ENSSGRP00000070546	72.9323	56.391
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	75.3684	62.7368	myripristis_murdjan	ENSMMDP00005035384	70.0587	58.317
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	20.4211	17.0526	denticeps_clupeoides	ENSDCDP00000034645	90.6542	75.7009
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	20.4211	17.0526	denticeps_clupeoides	ENSDCDP00000006041	90.6542	75.7009
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	65.4737	52.6316	oncorhynchus_tshawytscha	ENSOTSP00005013947	54.1812	43.554
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	54.7368	42.5263	paramormyrops_kingsleyae	ENSPKIP00000032055	44.2177	34.3537
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	53.4737	40.2105	scleropages_formosus	ENSSFOP00015025307	54.0426	40.6383
ENSAPOG00000021668	acanthochromis_polyacanthus	ENSAPOP00000018346	45.4737	34.5263	cyprinus_carpio_carpio	ENSCCRP00000116338	62.6087	47.5362

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression