RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSAPEG00000024651	Gene ID		Accession	-
Symbol	eef1da	Alias	-	Full Name	eukaryotic translation elongation factor 1 delta a (guanine nucleotide exchange protein)
Status	Confidence	Length	14514 bases	Strand	Plus strand
Position	10 : 15733645 - 15748158	RNA binding domain	EF1_GNE
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSAPEP00000034726	EF1_GNE	PF00736	6.8e-36	1
ENSAPEP00000034721	EF1_GNE	PF00736	1.1e-35	1
ENSAPEP00000034723	EF1_GNE	PF00736	1.1e-35	1
ENSAPEP00000034718	EF1_GNE	PF00736	1.1e-35	1
ENSAPEP00000034717	EF1_GNE	PF00736	2.5e-35	1
ENSAPEP00000034714	EF1_GNE	PF00736	2.8e-35	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
eef1da-201	ENSAPET00000035609	2958	455aa	ENSAPEP00000034714
eef1da-202	ENSAPET00000035612	2901	436aa	ENSAPEP00000034717
eef1da-203	ENSAPET00000035613	2379	265aa	ENSAPEP00000034718
eef1da-204	ENSAPET00000035616	2358	263aa	ENSAPEP00000034721
eef1da-205	ENSAPET00000035618	2336	263aa	ENSAPEP00000034723
eef1da-206	ENSAPET00000035621	690	229aa	ENSAPEP00000034726

Gene Model

Click here to download ENSAPEG00000024651's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSAPEG00000024651's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000025625	69.2579	61.8375	amphiprion_percula	ENSAPEP00000034714	43.0769	38.4615
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000021908	21.1974	10.0324	amphiprion_percula	ENSAPEP00000034714	28.7912	13.6264
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000011086	66.9767	55.814	amphiprion_percula	ENSAPEP00000034714	31.6484	26.3736

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	89.011	81.978	poecilia_reticulata	ENSPREP00000024439	87.0968	80.2151
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	89.2308	81.5385	xiphophorus_maculatus	ENSXMAP00000028803	88.2609	80.6522
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	83.0769	73.8462	oryzias_latipes	ENSORLP00000029879	85.9091	76.3636
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	51.2088	46.8132	cyclopterus_lumpus	ENSCLMP00005032242	90.6615	82.8794
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	85.0549	78.2418	haplochromis_burtoni	ENSHBUP00000009497	83.7662	77.0563
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	83.5165	76.4835	astatotilapia_calliptera	ENSACLP00000021338	84.8214	77.6786
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	86.8132	81.0989	oreochromis_niloticus	ENSONIP00000011687	87.7778	82
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	89.011	82.4176	sparus_aurata	ENSSAUP00010026005	84.375	78.125
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	60.4396	54.7253	lates_calcarifer	ENSLCAP00010001485	89.2857	80.8442
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	86.1538	79.7802	dicentrarchus_labrax	ENSDLAP00005043499	86.7257	80.3097
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	87.4725	79.5604	cyprinodon_variegatus	ENSCVAP00000000558	87.0897	79.2123
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	88.1319	82.8571	kryptolebias_marmoratus	ENSKMAP00000003362	82.3409	77.4127
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	49.6703	45.4945	oryzias_melastigma	ENSOMEP00000008975	93.3884	85.5372
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	74.2857	65.4945	takifugu_rubripes	ENSTRUP00000072005	73.4783	64.7826
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	83.2967	77.1429	neolamprologus_brichardi	ENSNBRP00000011080	84.2222	78
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	89.4505	83.956	seriola_dumerili	ENSSDUP00000021188	85.325	80.0839
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	89.011	81.978	poecilia_formosa	ENSPFOP00000007135	87.2845	80.3879
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	52.7473	49.4506	poecilia_latipinna	ENSPLAP00000006222	89.8876	84.2697
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	82.6374	75.1648	cottoperca_gobio	ENSCGOP00000034596	77.2074	70.2259
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	50.5494	48.1319	scophthalmus_maximus	ENSSMAP00000062971	51.9187	49.4357
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	51.8681	48.3517	labrus_bergylta	ENSLBEP00000021282	87.7323	81.7844
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	57.1429	55.3846	acanthochromis_polyacanthus	ENSAPOP00000007668	96.2963	93.3333
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	99.3407	98.9011	amphiprion_ocellaris	ENSAOCP00000027518	98.0477	97.6139
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	48.3517	44.3956	gasterosteus_aculeatus	ENSGACP00000022705	82.7068	75.9398
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	65.4945	57.5824	tetraodon_nigroviridis	ENSTNIP00000021803	72.8606	64.0587
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	82.1978	75.8242	nothobranchius_furzeri	ENSNFUP00015039049	78.7368	72.6316
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	85.2747	78.4615	maylandia_zebra	ENSMZEP00005031570	86.8009	79.8658
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	81.5385	70.5495	oryzias_javanicus	ENSOJAP00000030739	80.4772	69.6312
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	53.6264	51.6483	mastacembelus_armatus	ENSMAMP00000045984	93.4866	90.0383
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	43.7363	40.6593	amphilophus_citrinellus	ENSACIP00000025262	87.6652	81.4978
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	67.4725	59.7802	hippocampus_comes	ENSHCOP00000011393	75.0611	66.5037
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	85.4945	78.9011	pundamilia_nyererei	ENSPNYP00000022483	86.637	79.9555
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	74.2857	67.033	anabas_testudineus	ENSATEP00000003423	81.4458	73.494
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	91.2088	85.0549	larimichthys_crocea	ENSLCRP00005024383	84.5214	78.8187
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	82.8571	75.1648	cynoglossus_semilaevis	ENSCSEP00000020418	78.2158	70.9544
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	92.3077	86.5934	seriola_lalandi_dorsalis	ENSSLDP00000019473	85.5397	80.2444
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	88.3516	81.7582	sander_lucioperca	ENSSLUP00000009053	86.8251	80.3456
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	60.2198	54.9451	betta_splendens	ENSBSLP00000034589	65.2381	59.5238
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	94.2857	89.4505	stegastes_partitus	ENSSPAP00000021265	94.0789	89.2544
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	84.3956	74.7253	oryzias_sinensis	ENSOSIP00000017946	85.1441	75.388
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	28.7912	20.8791	caenorhabditis_elegans	F54H12.6.1	61.5023	44.6009
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	31.2088	24.8352	drosophila_melanogaster	FBpp0311691	63.964	50.9009
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	34.5055	26.5934	drosophila_melanogaster	FBpp0079542	61.3281	47.2656
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	30.989	23.5165	ciona_intestinalis	ENSCINP00000023206	62.6667	47.5556
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	36.7033	30.1099	petromyzon_marinus	ENSPMAP00000008388	66.5339	54.5817
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	65.0549	52.5275	clupea_harengus	ENSCHAP00000006537	56.705	45.7854
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	44.8352	38.9011	danio_rerio	ENSDARP00000130232	83.2653	72.2449
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	60.2198	48.7912	carassius_auratus	ENSCARP00000042351	59.436	48.1562
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	47.9121	40	carassius_auratus	ENSCARP00000088504	66.2614	55.3191
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	50.1099	42.1978	carassius_auratus	ENSCARP00000041807	68.2635	57.485
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	47.033	40.2198	carassius_auratus	ENSCARP00000103320	70.1639	60
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	43.2967	36.044	astyanax_mexicanus	ENSAMXP00000032768	71.8978	59.854
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	54.7253	46.5934	ictalurus_punctatus	ENSIPUP00000011396	55.3333	47.1111
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	56.7033	44.1758	electrophorus_electricus	ENSEEEP00000003405	55.1282	42.9487
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	58.022	47.033	esox_lucius	ENSELUP00000045252	54.5455	44.2149
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	44.8352	39.5604	oncorhynchus_kisutch	ENSOKIP00005077289	87.1795	76.9231
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	44.1758	36.9231	salmo_salar	ENSSSAP00000154523	68.8356	57.5342
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	45.9341	40.2198	salmo_trutta	ENSSTUP00000015832	82.2835	72.0472
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	58.2418	49.8901	gadus_morhua	ENSGMOP00000035246	63.5492	54.4365
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	14.2857	6.59341	ochotona_princeps	ENSOPRP00000015286	12.1269	5.59701
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	55.1648	43.5165	pygocentrus_nattereri	ENSPNAP00000025064	51.0163	40.2439
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	34.7253	27.9121	ciona_savignyi	ENSCSAVP00000004915	59.8485	48.1061
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	31.6484	24.3956	ciona_savignyi	ENSCSAVP00000018739	64.2857	49.5536
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	44.3956	38.6813	sinocyclocheilus_grahami	ENSSGRP00000102698	76.2264	66.4151
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	58.9011	47.4725	sinocyclocheilus_grahami	ENSSGRP00000000399	61.4679	49.5413
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	46.3736	38.6813	denticeps_clupeoides	ENSDCDP00000017115	72.0136	60.0683
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	58.9011	51.4286	myripristis_murdjan	ENSMMDP00005025204	72.4324	63.2432
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	48.3517	40.6593	cyprinus_carpio_carpio	ENSCCRP00000154155	72.8477	61.2583
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	60.6593	49.011	cyprinus_carpio_carpio	ENSCCRP00000175601	59.2275	47.8541
ENSAPEG00000024651	amphiprion_percula	ENSAPEP00000034714	26.3736	19.3407	saccharomyces_cerevisiae	YAL003W	58.2524	42.7184

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression