RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSAPEG00000020590	Gene ID		Accession	-
Symbol	dennd4a	Alias	-	Full Name	DENN/MADD domain containing 4A
Status	Confidence	Length	20252 bases	Strand	Minus strand
Position	4 : 13473211 - 13493462	RNA binding domain	PPR_3
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSAPEP00000029061	PPR_3	PF13812	2.5e-05	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSAPET00000029831	4890	1629aa	ENSAPEP00000029061

Gene Model

Click here to download ENSAPEG00000020590's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSAPEG00000020590's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000000209	68.8877	58.8656	amphiprion_percula	ENSAPEP00000029061	76.7956	65.6231
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000031059	54.5124	42.9979	amphiprion_percula	ENSAPEP00000029061	64.5181	50.8901
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029230	60.8609	46.6225	amphiprion_percula	ENSAPEP00000029061	56.415	43.2167
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000007365	30.5476	15.9462	amphiprion_percula	ENSAPEP00000029061	19.5212	10.1903
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000000881	32.3265	16.4898	amphiprion_percula	ENSAPEP00000029061	24.3094	12.4002

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	11.5408	11.2339	fundulus_heteroclitus	ENSFHEP00000004314	94	91.5
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	92.9405	88.3364	poecilia_reticulata	ENSPREP00000015280	89.8516	85.4006
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	92.388	87.477	xiphophorus_maculatus	ENSXMAP00000024429	89.3175	84.5697
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	90.1166	85.574	oryzias_latipes	ENSORLP00000032270	86.3529	82
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	91.0374	86.9245	cyclopterus_lumpus	ENSCLMP00005000450	90.2068	86.1314
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	94.7821	91.283	haplochromis_burtoni	ENSHBUP00000011485	90.3981	87.0609
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	94.6593	91.3444	astatotilapia_calliptera	ENSACLP00000023492	90.3869	87.2216
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	94.3524	91.4058	oreochromis_niloticus	ENSONIP00000019404	90.1466	87.3314
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	95.887	92.5107	sparus_aurata	ENSSAUP00010021495	90.8668	87.6673
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	89.6869	87.0473	lates_calcarifer	ENSLCAP00010025071	86.2456	83.7072
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	95.5187	92.6949	dicentrarchus_labrax	ENSDLAP00005008654	89.3226	86.682
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	91.1602	86.7403	cyprinodon_variegatus	ENSCVAP00000016594	88.4455	84.1572
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	93.7385	90.1166	kryptolebias_marmoratus	ENSKMAP00000026080	90.5694	87.07
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	91.7741	87.5998	oryzias_melastigma	ENSOMEP00000019693	89.2005	85.1432
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	91.1602	86.9245	takifugu_rubripes	ENSTRUP00000077331	87.2503	83.1962
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	93.8613	90.4236	neolamprologus_brichardi	ENSNBRP00000021577	92.1084	88.7349
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	95.1504	92.5721	seriola_dumerili	ENSSDUP00000011240	89.3887	86.9666
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	92.6335	88.0909	poecilia_formosa	ENSPFOP00000007517	89.5549	85.1632
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	92.2652	87.8453	poecilia_latipinna	ENSPLAP00000014366	91.8704	87.4694
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	94.7207	91.4058	cottoperca_gobio	ENSCGOP00000026768	89.1908	86.0694
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	94.1682	90.8533	scophthalmus_maximus	ENSSMAP00000024285	86.6177	83.5686
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	92.8177	88.8889	labrus_bergylta	ENSLBEP00000020784	91.8591	87.9708
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	98.5881	97.7287	acanthochromis_polyacanthus	ENSAPOP00000025208	97.6886	96.837
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	99.5703	99.3861	amphiprion_ocellaris	ENSAOCP00000028006	93.9745	93.8007
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	89.7483	85.3284	gasterosteus_aculeatus	ENSGACP00000006444	81.2222	77.2222
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	77.5936	72.6212	tetraodon_nigroviridis	ENSTNIP00000011260	83.8753	78.5003
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	93.186	88.7661	nothobranchius_furzeri	ENSNFUP00015018086	90.2497	85.9691
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	94.6593	91.283	maylandia_zebra	ENSMZEP00005030373	90.3869	87.163
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	92.2038	87.7225	oryzias_javanicus	ENSOJAP00000029341	87.022	82.7926
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	94.4751	91.283	mastacembelus_armatus	ENSMAMP00000045815	89.2691	86.2529
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	93.3702	90.9761	amphilophus_citrinellus	ENSACIP00000004616	92.126	89.7638
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	88.275	82.6274	hippocampus_comes	ENSHCOP00000011527	90.2699	84.4947
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	94.4137	91.0988	pundamilia_nyererei	ENSPNYP00000018186	92.2062	88.9688
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	86.9859	83.9779	anabas_testudineus	ENSATEP00000065851	85.7229	82.7586
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	94.8435	91.4058	larimichthys_crocea	ENSLCRP00005024859	89.9825	86.721
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	90.9761	85.7581	cynoglossus_semilaevis	ENSCSEP00000010540	85.8136	80.8917
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	94.3524	91.7127	seriola_lalandi_dorsalis	ENSSLDP00000030869	93.1515	90.5455
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	91.0374	87.3542	sander_lucioperca	ENSSLUP00000043076	86.0708	82.5885
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	89.5028	85.267	betta_splendens	ENSBSLP00000030778	86.7341	82.6294
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	97.7901	96.6851	stegastes_partitus	ENSSPAP00000025000	92.5625	91.5166
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	88.3364	83.7937	oryzias_sinensis	ENSOSIP00000046746	88.3364	83.7937
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	7.67342	5.27931	ciona_intestinalis	ENSCINP00000030085	40.0641	27.5641
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	7.3051	5.52486	callorhinchus_milii	ENSCMIP00000003645	64.6739	48.913
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	84.7145	75.6292	esox_lucius	ENSELUP00000047785	63.7413	56.9053
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	84.4076	75.9975	oncorhynchus_kisutch	ENSOKIP00005044775	58.6354	52.7932
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	84.8373	76.4273	salmo_salar	ENSSSAP00000021133	70.981	63.9445
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	81.5224	73.1737	oncorhynchus_mykiss	ENSOMYP00000112239	79.7119	71.5486
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	85.3284	76.7342	salmo_trutta	ENSSTUP00000034440	69.6742	62.6566
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	86.3106	79.2511	gadus_morhua	ENSGMOP00000034270	79.1221	72.6505
ENSAPEG00000020590	amphiprion_percula	ENSAPEP00000029061	90.3008	86.6176	myripristis_murdjan	ENSMMDP00005020775	88.7214	85.1025

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression