RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSAOCG00000005219	Gene ID	111563143	Accession	-
Symbol		Alias	-	Full Name	ubiquitin related modifier 1
Status	Confidence	Length	11550 bases	Strand	Minus strand
Position	NXFZ01006219.1 : 37879 - 49428	RNA binding domain	Urm1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSAOCP00000020844	Urm1	PF09138	6.5e-39	1
ENSAOCP00000020829	Urm1	PF09138	2.5e-13	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSAOCT00000012022	1361	101aa	ENSAOCP00000020844
-	ENSAOCT00000012032	1312	131aa	ENSAOCP00000020829

Gene Model

Click here to download ENSAOCG00000005219's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSAOCG00000005219's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAOCG00000005219

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAOCG00000005219	amphiprion_ocellaris	ENSAOCP00000020829	45.0382	35.1145	oncorhynchus_kisutch	ENSOKIP00005094615	52.6786	41.0714
ENSAOCG00000005219	amphiprion_ocellaris	ENSAOCP00000020829	48.855	29.771	capra_hircus	ENSCHIP00000020582	62.7451	38.2353
ENSAOCG00000005219	amphiprion_ocellaris	ENSAOCP00000020829	45.0382	31.2977	bison_bison_bison	ENSBBBP00000019172	59.596	41.4141
ENSAOCG00000005219	amphiprion_ocellaris	ENSAOCP00000020829	45.8015	37.4046	struthio_camelus_australis	ENSSCUP00000023414	37.037	30.2469

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression