RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSAMXG00000032680	Gene ID		Accession	-
Symbol	si	Alias	-	Full Name	si:dkey-151g10.6
Status	Confidence	Length	159 bases	Strand	Minus strand
Position	15 : 11483341 - 11483499	RNA binding domain	Ribosomal_L41
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSAMXP00000033549	Ribosomal_L41	PF05162	1.4e-06	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSAMXT00000040289	63	20aa	ENSAMXP00000033549

Gene Model

Click here to download ENSAMXG00000032680's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSAMXG00000032680's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAMXG00000032680

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	danio_rerio	ENSDARP00000135179	80	80
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	astatotilapia_calliptera	ENSACLP00000009041	100	100
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	xiphophorus_maculatus	ENSXMAP00000036407	83.3333	83.3333
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	poecilia_latipinna	ENSPLAP00000022487	80	80
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	pygocentrus_nattereri	ENSPNAP00000014237	83.3333	83.3333
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	kryptolebias_marmoratus	ENSKMAP00000028931	100	100
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	poecilia_reticulata	ENSPREP00000018435	80	80
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	hippocampus_comes	ENSHCOP00000002089	100	100
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	amphilophus_citrinellus	ENSACIP00000021264	76.9231	76.9231
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	fundulus_heteroclitus	ENSFHEP00000025345	80	80
ENSAMXG00000032680	astyanax_mexicanus	ENSAMXP00000033549	100	100	labrus_bergylta	ENSLBEP00000015267	83.3333	83.3333

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression