RBPWorld - a comprehensive database of RNA Binding Proteins

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RBP World!

Description

Ensembl ID	ENSAMXG00000030303	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	5317 bases	Strand	Plus strand
Position	20 : 18332852 - 18338168	RNA binding domain	R3H
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSAMXP00000051503	R3H	PF01424	1.2e-10	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSAMXT00000031809	606	201aa	ENSAMXP00000051503

Gene Model

Click here to download ENSAMXG00000030303's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSAMXG00000030303's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAMXG00000030303

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAMXG00000030303	astyanax_mexicanus	ENSAMXP00000051503	31.3433	23.8806	esox_lucius	ENSELUP00000042421	35.5932	27.1186
ENSAMXG00000030303	astyanax_mexicanus	ENSAMXP00000051503	38.806	22.3881	xenopus_tropicalis	ENSXETP00000115613	16.5957	9.57447
ENSAMXG00000030303	astyanax_mexicanus	ENSAMXP00000051503	40.2985	25.8706	takifugu_rubripes	ENSTRUP00000040599	47.093	30.2326
ENSAMXG00000030303	astyanax_mexicanus	ENSAMXP00000051503	45.7711	35.3234	larimichthys_crocea	ENSLCRP00005041748	37.247	28.7449
ENSAMXG00000030303	astyanax_mexicanus	ENSAMXP00000051503	31.3433	22.8856	nothobranchius_furzeri	ENSNFUP00015024238	32.6425	23.8342
ENSAMXG00000030303	astyanax_mexicanus	ENSAMXP00000051503	38.806	29.3532	denticeps_clupeoides	ENSDCDP00000021718	45.8824	34.7059
ENSAMXG00000030303	astyanax_mexicanus	ENSAMXP00000051503	45.7711	33.3333	sparus_aurata	ENSSAUP00010001151	32.9749	24.0143
ENSAMXG00000030303	astyanax_mexicanus	ENSAMXP00000051503	40.2985	30.3483	betta_splendens	ENSBSLP00000010789	23.5465	17.7326
ENSAMXG00000030303	astyanax_mexicanus	ENSAMXP00000051503	41.791	27.8607	labrus_bergylta	ENSLBEP00000019922	38.1818	25.4545
ENSAMXG00000030303	astyanax_mexicanus	ENSAMXP00000051503	48.7562	36.3184	dicentrarchus_labrax	ENSDLAP00005003597	37.5479	27.9693

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression