RBPWorld - a comprehensive database of RNA Binding Proteins

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Description

Ensembl ID	ENSAMEG00000009847	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	37894 bases	Strand	Minus strand
Position	12 : 42202713 - 42240606	RNA binding domain	TUDOR
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSAMEP00000010342	TUDOR	PF00567	3.6e-22	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSAMET00000010793	1522	395aa	ENSAMEP00000010342

Gene Model

Click here to download ENSAMEG00000009847's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSAMEG00000009847's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000029052	5.62914	3.02744	ailuropoda_melanoleuca	ENSAMEP00000010342	30.1266	16.2025
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000015531	9.4686	4.92754	ailuropoda_melanoleuca	ENSAMEP00000010342	24.8101	12.9114
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000000498	11.21	7.29537	ailuropoda_melanoleuca	ENSAMEP00000010342	15.9494	10.3797
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000001764	5.92771	2.98795	ailuropoda_melanoleuca	ENSAMEP00000010342	31.1392	15.6962
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000005179	9.28962	4.18944	ailuropoda_melanoleuca	ENSAMEP00000010342	25.8228	11.6456
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000016023	9.3199	4.70193	ailuropoda_melanoleuca	ENSAMEP00000010342	28.1013	14.1772

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	87.3418	78.481	macaca_mulatta	ENSMMUP00000031689	87.3418	78.481
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	91.3924	86.076	panthera_tigris_altaica	ENSPTIP00000010565	93.2817	87.8553
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	90.3797	83.038	bison_bison_bison	ENSBBBP00000001373	90.6091	83.2487
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	90.3797	85.0633	balaenoptera_musculus	ENSBMSP00010024684	90.6091	85.2792
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	92.6582	88.6076	neovison_vison	ENSNVIP00000025586	93.1298	89.0585
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	28.6076	13.9241	drosophila_melanogaster	FBpp0071508	4.49304	2.18688
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	15.443	8.35443	eptatretus_burgeri	ENSEBUP00000018766	18.1009	9.79228
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	25.8228	13.4177	eptatretus_burgeri	ENSEBUP00000007624	7.36994	3.82948
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	40.7595	26.8354	astatotilapia_calliptera	ENSACLP00000004868	52.2727	34.4156
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	51.1392	33.924	xenopus_tropicalis	ENSXETP00000075646	16.8193	11.1574
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	62.0253	44.8101	meleagris_gallopavo	ENSMGAP00000017709	38.2215	27.6131
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	62.0253	45.0633	gallus_gallus	ENSGALP00010039012	48.2283	35.0394
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	44.557	26.5823	leptobrachium_leishanense	ENSLLEP00000013485	58.6667	35
ENSAMEG00000009847	ailuropoda_melanoleuca	ENSAMEP00000010342	36.2025	24.3038	maylandia_zebra	ENSMZEP00005030452	57.2	38.4

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Expression