RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSACLG00000012308	Gene ID	113016791	Accession	-
Symbol	si	Alias	-	Full Name	uncharacterized LOC113016791
Status	Confidence	Length	8219 bases	Strand	Minus strand
Position	23 : 6606442 - 6614660	RNA binding domain	Isy1
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSACLP00000017991	Isy1	PF06246	1.7e-08	1

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
si:dkey-86e18.1-201	ENSACLT00000018421	4917	286aa	ENSACLP00000017991

Gene Model

Click here to download ENSACLG00000012308's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSACLG00000012308's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSACLG00000012308

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	69.9301	57.6923	fundulus_heteroclitus	ENSFHEP00000000223	64.9351	53.5714
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	62.9371	53.8462	poecilia_reticulata	ENSPREP00000002880	56.7823	48.5804
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	71.3287	59.7902	xiphophorus_maculatus	ENSXMAP00000011423	67.1053	56.25
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	53.1469	45.4545	cyclopterus_lumpus	ENSCLMP00005026862	70.6977	60.4651
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	60.1399	52.0979	cyclopterus_lumpus	ENSCLMP00005026866	74.4589	64.5022
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	67.4825	54.5455	oryzias_latipes	ENSORLP00000026499	63.0719	50.9804
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	98.951	98.951	haplochromis_burtoni	ENSHBUP00000016294	98.951	98.951
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	95.1049	94.0559	oreochromis_niloticus	ENSONIP00000040749	96.1131	95.053
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	68.5315	55.2448	oryzias_melastigma	ENSOMEP00000000888	64.6865	52.1452
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	78.3217	69.5804	dicentrarchus_labrax	ENSDLAP00005004196	64	56.8571
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	71.3287	59.4406	poecilia_formosa	ENSPFOP00000014508	67.1053	55.9211
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	67.8322	59.0909	amphiprion_ocellaris	ENSAOCP00000010212	78.2258	68.1452
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	67.4825	60.4895	takifugu_rubripes	ENSTRUP00000058398	69.9275	62.6812
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	71.3287	65.7343	lates_calcarifer	ENSLCAP00010017655	81.2749	74.9004
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	73.7762	68.8811	amphilophus_citrinellus	ENSACIP00000010036	84.4	78.8
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	100	100	maylandia_zebra	ENSMZEP00005026075	100	100
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	77.972	67.1329	scophthalmus_maximus	ENSSMAP00000028848	71.4744	61.5385
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	76.9231	66.0839	anabas_testudineus	ENSATEP00000026044	74.0741	63.6364
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	80.0699	70.979	seriola_lalandi_dorsalis	ENSSLDP00000000253	71.7868	63.6364
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	63.2867	47.9021	cyprinodon_variegatus	ENSCVAP00000031087	51.4205	38.9205
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	67.8322	55.2448	betta_splendens	ENSBSLP00000020917	60.0619	48.9164
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	76.9231	66.4336	amphiprion_percula	ENSAPEP00000016554	72.3684	62.5
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	99.3007	98.951	pundamilia_nyererei	ENSPNYP00000009840	99.3007	98.951
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	77.6224	69.2308	acanthochromis_polyacanthus	ENSAPOP00000001501	70.4762	62.8571
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	77.972	68.5315	sander_lucioperca	ENSSLUP00000051989	73.1148	64.2623
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	80.7692	71.6783	seriola_dumerili	ENSSDUP00000000995	72.6415	64.4654
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	68.5315	55.2448	oryzias_sinensis	ENSOSIP00000010002	64.0523	51.634
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	68.1818	55.5944	oryzias_javanicus	ENSOJAP00000008950	64.1447	52.3026
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	76.5734	66.0839	sparus_aurata	ENSSAUP00010020899	74.2373	64.0678
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	77.6224	66.7832	kryptolebias_marmoratus	ENSKMAP00000011161	72.3127	62.215
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	81.1189	72.3776	cottoperca_gobio	ENSCGOP00000003309	73.4177	65.5063
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	65.7343	58.042	cynoglossus_semilaevis	ENSCSEP00000011614	65.0519	57.4394
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	83.2168	82.1678	neolamprologus_brichardi	ENSNBRP00000031082	95.5823	94.3775
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	76.5734	67.4825	mastacembelus_armatus	ENSMAMP00000063006	69.5238	61.2698
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	54.5455	44.0559	hippocampus_comes	ENSHCOP00000014560	58.8679	47.5472
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	67.4825	54.8951	labrus_bergylta	ENSLBEP00000010421	69.6751	56.6787
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	78.3217	69.9301	stegastes_partitus	ENSSPAP00000019487	72.7273	64.9351
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	71.3287	59.0909	poecilia_latipinna	ENSPLAP00000007541	67.1053	55.5921
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	77.6224	67.4825	larimichthys_crocea	ENSLCRP00005048956	68.0982	59.2025
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	69.9301	58.042	nothobranchius_furzeri	ENSNFUP00015040707	66.0066	54.7855
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	37.7622	27.972	callorhinchus_milii	ENSCMIP00000047508	51.1848	37.9147
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	51.049	38.1119	latimeria_chalumnae	ENSLACP00000004415	53.0909	39.6364
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	56.2937	44.0559	lepisosteus_oculatus	ENSLOCP00000010842	61.6858	48.2759
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	57.6923	47.5524	danio_rerio	ENSDARP00000063916	64.4531	53.125
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	55.2448	46.1538	carassius_auratus	ENSCARP00000109213	58.9552	49.2537
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	55.5944	42.6573	astyanax_mexicanus	ENSAMXP00000038881	55.2083	42.3611
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	55.2448	46.8531	ictalurus_punctatus	ENSIPUP00000018012	60.7692	51.5385
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	63.986	50.6993	esox_lucius	ENSELUP00000006344	61.4094	48.6577
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	65.3846	53.1469	oncorhynchus_kisutch	ENSOKIP00005032665	52.2346	42.4581
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	60.4895	50.6993	oncorhynchus_mykiss	ENSOMYP00000069877	70.6122	59.1837
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	64.3357	52.0979	salmo_salar	ENSSSAP00000056768	62.7986	50.8532
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	64.6853	52.7972	salmo_trutta	ENSSTUP00000005012	63.1399	51.5358
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	48.2517	39.1608	gadus_morhua	ENSGMOP00000022898	65.0943	52.8302
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	54.1958	40.5594	erpetoichthys_calabaricus	ENSECRP00000025919	54.9645	41.1348
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	57.3427	42.3077	scleropages_formosus	ENSSFOP00015041684	59.6364	44
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	57.3427	42.3077	scleropages_formosus	ENSSFOP00015050610	59.6364	44
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	57.3427	47.5524	pygocentrus_nattereri	ENSPNAP00000023490	63.5659	52.7132
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	76.5734	65.3846	myripristis_murdjan	ENSMMDP00005029580	61.8644	52.8249
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	54.8951	47.2028	cyprinus_carpio_carpio	ENSCCRP00000103366	58.8015	50.5618
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	65.3846	53.1469	oncorhynchus_tshawytscha	ENSOTSP00005079409	63.8225	51.8771
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	50.3497	39.1608	leptobrachium_leishanense	ENSLLEP00000045358	55.814	43.4109
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	48.6014	40.5594	sinocyclocheilus_grahami	ENSSGRP00000006548	62.3318	52.0179
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	54.8951	45.8042	sinocyclocheilus_grahami	ENSSGRP00000069853	58.5821	48.8806
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	50.3497	40.9091	paramormyrops_kingsleyae	ENSPKIP00000027532	61.0169	49.5763
ENSACLG00000012308	astatotilapia_calliptera	ENSACLP00000017991	63.986	52.0979	hucho_hucho	ENSHHUP00000054092	61.8243	50.3378

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression