RBPWorld - a comprehensive database of RNA Binding Proteins

RBP Type	N.A.
Diseases
Drug
Main interacting RNAs
Moonlighting functions
Localizations
BulkPerturb-seq

Description

Ensembl ID	ENSACAG00000022598	Gene ID		Accession	-
Symbol		Alias	-	Full Name	NA
Status	Confidence	Length	16925 bases	Strand	Minus strand
Position	4 : 114085679 - 114102603	RNA binding domain	Calreticulin
Summary	N.A.

RNA binding domains (RBDs)

Protein	Domain	Pfam ID	E-value	Domain number
ENSACAP00000036949	Calreticulin	PF00262	7.3e-82	1
ENSACAP00000036949	Calreticulin	PF00262	7.3e-82	2
ENSACAP00000036949	Calreticulin	PF00262	7.3e-82	3
ENSACAP00000037605	Calreticulin	PF00262	8.6e-71	1
ENSACAP00000037605	Calreticulin	PF00262	8.6e-71	2
ENSACAP00000019047	Calreticulin	PF00262	7.9e-70	1
ENSACAP00000019047	Calreticulin	PF00262	7.9e-70	2

RNA binding proteomes (RBPomes)

Pubmed ID	Full Name	Cell	Author	Time	Doi

Literatures on RNA binding capacity

Pubmed ID	Title	Author	Time	Journal

Transcripts

Name	Transcript ID	bp	Protein	Translation ID
-	ENSACAT00000045236	1179	392aa	ENSACAP00000037605
-	ENSACAT00000043891	1122	373aa	ENSACAP00000036949
-	ENSACAT00000025568	1146	381aa	ENSACAP00000019047

Gene Model

Click here to download ENSACAG00000022598's gene model file

Pathways

Pathway ID	Pathway Name	Source

Phenotypes

ensgID	Trait	pValue	Pubmed ID

GWAS

ensgID	SNP	Chromosome	Position	Trait	PubmedID	Or or BEAT	EFO ID

Protein-Protein Interaction (PPI)

Click here to download ENSACAG00000022598's PPI file

Paralogs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000016882	65.0831	52.4941	anolis_carolinensis	ENSACAP00000037605	69.898	56.3776
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000009098	59.2857	44.2857	anolis_carolinensis	ENSACAP00000037605	21.1735	15.8163
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000016009	34.0872	23.4249	anolis_carolinensis	ENSACAP00000037605	53.8265	36.9898
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000002274	33.9527	24.6622	anolis_carolinensis	ENSACAP00000037605	51.2755	37.2449

Orthologs

Ensembl ID	Source				Target
Ensembl ID	Species	Protein ID	Perc_pos	Perc_id	Species	Protein ID	Perc_pos	Perc_id
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	63.7755	46.4286	caenorhabditis_elegans	Y38A10A.5.1	63.2911	46.076
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	73.7245	66.3265	laticauda_laticaudata	ENSLLTP00000009253	85.503	76.9231
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	81.8878	73.4694	notechis_scutatus	ENSNSUP00000022517	78.1022	70.073
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	83.1633	74.2347	pseudonaja_textilis	ENSPTXP00000002410	78.5542	70.1205
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	65.051	51.5306	ornithorhynchus_anatinus	ENSOANP00000043109	56.6667	44.8889
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	66.5816	52.551	sarcophilus_harrisii	ENSSHAP00000007857	60.6977	47.907
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	44.898	35.2041	dasypus_novemcinctus	ENSDNOP00000033284	58.6667	46
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	60.7143	43.1122	delphinapterus_leucas	ENSDLEP00000022567	47.0356	33.3992
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	54.8469	41.8367	physeter_catodon	ENSPCTP00005016082	54.9872	41.9437
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	66.8367	50.7653	equus_caballus	ENSECAP00000012957	60.0917	45.6422
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	62.7551	49.2347	loxodonta_africana	ENSLAFP00000014197	58.5714	45.9524
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	66.0714	50.7653	equus_asinus	ENSEASP00005015743	60.7981	46.7136
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	51.7857	40.3061	sus_scrofa	ENSSSCP00000079059	58.1662	45.2722
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	41.0714	31.1224	ovis_aries_rambouillet	ENSOARP00020006371	56.8905	43.1095
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	55.6122	41.0714	capra_hircus	ENSCHIP00000007700	56.6234	41.8182
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	66.5816	50.5102	dipodomys_ordii	ENSDORP00000024217	65.9091	50
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	46.6837	35.9694	marmota_marmota_marmota	ENSMMMP00000019710	58.4665	45.0479
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	65.8163	51.2755	oryctolagus_cuniculus	ENSOCUP00000022502	62.4697	48.6683
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	46.9388	35.9694	urocitellus_parryii	ENSUPAP00010028308	58.7859	45.0479
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	39.7959	30.8673	mesocricetus_auratus	ENSMAUP00000018113	55.516	43.0605
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	64.7959	50	cricetulus_griseus_chok1gshd	ENSCGRP00001009392	61.6505	47.5728
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	64.5408	50.5102	mus_musculus	ENSMUSP00000030285	60.2381	47.1429
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	64.7959	50.5102	mus_pahari	MGP_PahariEiJ_P0078658	60.9113	47.482
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	45.4082	36.4796	mus_caroli	MGP_CAROLIEiJ_P0063549	56.869	45.6869
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	65.5612	50.7653	mus_spretus	MGP_SPRETEiJ_P0066041	58.5421	45.3303
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	65.5612	50.7653	mus_spicilegus	ENSMSIP00000011730	58.5421	45.3303
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	64.7959	50.7653	rattus_norvegicus	ENSRNOP00000063135	57.7273	45.2273
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	46.1735	35.9694	cavia_porcellus	ENSCPOP00000018089	57.4603	44.7619
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	64.7959	50.5102	octodon_degus	ENSODEP00000009816	61.5012	47.9419
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	61.2245	50.5102	monodelphis_domestica	ENSMODP00000001131	66.8524	55.1532
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	53.3163	41.0714	phascolarctos_cinereus	ENSPCIP00000041321	39.8095	30.6667
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	51.2755	39.7959	chinchilla_lanigera	ENSCLAP00000014218	57.1023	44.3182
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	41.8367	28.0612	saccharomyces_cerevisiae	YAL058W	32.6693	21.9123
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	23.2143	17.8571	vombatus_ursinus	ENSVURP00010023843	60.2649	46.3576
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	57.398	44.6429	sciurus_vulgaris	ENSSVLP00005020105	61.8132	48.0769
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	50.7653	36.9898	rhinolophus_ferrumequinum	ENSRFEP00010004772	56.0563	40.8451
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	19.898	15.3061	moschus_moschiferus	ENSMMSP00000015226	60	46.1538
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	65.051	49.7449	otolemur_garnettii	ENSOGAP00000020448	61.5942	47.1014
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	45.9184	35.9694	microtus_ochrogaster	ENSMOCP00000003331	58.0645	45.4839
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	45.6633	33.4184	heterocephalus_glaber_female	ENSHGLP00000003679	48.9071	35.7924
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	46.9388	35.9694	heterocephalus_glaber_female	ENSHGLP00000004751	58.4127	44.7619
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	83.9286	75.7653	naja_naja	ENSNNAP00000017066	78.7081	71.0526
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	64.7959	50.2551	peromyscus_maniculatus_bairdii	ENSPEMP00000016566	61.5012	47.6998
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	67.0918	50.5102	prolemur_simus	ENSPSMP00000004541	62.619	47.1429
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	45.4082	30.6122	monodon_monoceros	ENSMMNP00015021421	51.2968	34.5821
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	66.8367	53.5714	leptobrachium_leishanense	ENSLLEP00000047543	46.6192	37.3665
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	45.6633	35.4592	nannospalax_galili	ENSNGAP00000016144	57.1885	44.4089
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	76.7857	67.3469	salvator_merianae	ENSSMRP00000023581	66.2996	58.1498
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	55.8673	41.5816	cervus_hanglu_yarkandensis	ENSCHYP00000027310	57.1802	42.5587
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	60.2041	43.6224	catagonus_wagneri	ENSCWAP00000006118	58.7065	42.5373
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	66.5816	50.7653	ictidomys_tridecemlineatus	ENSSTOP00000018840	59.7254	45.5378
ENSACAG00000022598	anolis_carolinensis	ENSACAP00000037605	76.2755	67.602	podarcis_muralis	ENSPMRP00000008343	80.3763	71.2366

Gene Ontology

Go ID	Go term	No. evidence	Entries	Species	Category

Welcome to

RBP World!

Functions and Diseases

Description

RNA binding domains (RBDs)

RNA binding proteomes (RBPomes)

Literatures on RNA binding capacity

Transcripts

Gene Model

Pathways

Phenotypes

GWAS

Protein-Protein Interaction (PPI)

Paralogs

Orthologs

Gene Ontology

Expression